Protein

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Genbank accession
XKC22354.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAVGEIQISALPQAALPIDLSDIFHLKQGIEDKRCTLEQLLAPHSSLRNNPHGVTKTQIGLDNVINALQLVAANNLSDITNVDEARANLQIMSSEEVNSLVQQHINDKSNPHNTTKAQVGLSNVQNWTTSNLYNEDEDKYATARAVNNLYKAVQASYPVGTLHLSMNSANPATYLICGGTWELVSKGRALVGYSDNSRPVGSNFGSSSVSLSSNNLPSHSHSIYLTGGGHTHGASIAIDSFDYGTKGTSSFDYGTKNTDTTGNHSHSVSGSTNITGNHQHSVGGRYGGDSIGGKLRVQAYGTEQVSSVDGDHSHTVSGSTNTTGNHTHTVAIGAHTHTVTIGAHTHKGTVTLQSSEHTHSGTTGATGAGQAFSVEQPSFVVYVWQRTA
Physico‐chemical
properties
protein length:388 AA
molecular weight: 40977,20060 Da
isoelectric point:6,28914
aromaticity:0,05412
hydropathy:-0,43170

Domains

Domains [InterPro]
DC_1039
STR
1–388
DC_1039
IPR051934
Unmapped
102–353
IPR051934
IPR053827
ATT
154–262
IPR053827 IPR005003 IPR005003 IPR005003
XKC22354.1
1 388
Architecture
STR
ATT
STR
STR 1-153 | ATT 154-262 | STR 263-388
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKC22354.1
1 388
Domain Start End Length (AA) Confidence
N-terminal 1 210 210 0,6705
Central domain 211 377 168 0,1188
C-terminal 378 388 10 0,9969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-210
Central
211-377
C-terminal
378-388

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage HMD-P8
[NCBI] 		3378324 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKC22354.1 [NCBI]
Genbank nucleotide accession
PQ568382.1 [NCBI]
CDS location
range 23342 -> 24508
strand +
CDS
ATGGCAGTAGGTGAAATTCAAATTAGTGCCTTGCCTCAAGCAGCCTTACCAATTGACCTTAGTGATATCTTCCATCTTAAGCAGGGTATTGAGGATAAGAGATGCACTCTTGAGCAACTACTTGCTCCACACTCAAGCCTAAGAAACAACCCTCATGGTGTTACTAAGACACAGATTGGTTTAGATAATGTTATTAATGCTCTTCAGTTAGTTGCTGCAAATAACTTATCAGACATTACTAATGTTGATGAGGCAAGAGCAAATCTACAGATTATGTCTTCAGAAGAGGTTAATAGCCTTGTTCAACAGCATATTAATGATAAGAGTAACCCACATAACACAACTAAGGCACAGGTTGGTTTAAGTAATGTTCAGAACTGGACAACATCTAACCTTTATAATGAAGATGAAGATAAGTACGCTACAGCAAGAGCAGTAAATAACTTGTACAAGGCTGTTCAGGCTTCTTACCCTGTCGGTACATTACATCTCTCGATGAACTCTGCTAACCCAGCTACCTACCTAATTTGTGGAGGTACTTGGGAGCTAGTATCAAAAGGACGAGCATTAGTAGGTTACAGTGACAATTCAAGACCAGTAGGCAGTAACTTTGGCTCTAGTAGTGTTAGTTTGTCTAGTAACAATTTACCATCACACAGTCATTCTATCTACCTAACTGGTGGTGGTCATACACATGGTGCTTCCATTGCTATTGATAGTTTTGATTATGGTACTAAGGGTACAAGCAGTTTCGATTATGGAACAAAAAACACTGATACTACAGGGAATCACTCACACTCAGTCAGTGGTTCTACCAATATCACTGGTAACCACCAGCATAGTGTAGGTGGTCGTTACGGTGGTGACTCTATCGGTGGTAAACTCCGTGTTCAGGCATATGGTACAGAACAGGTTTCCAGTGTAGATGGCGACCACTCGCACACTGTTAGCGGTTCAACAAATACCACAGGTAATCACACACATACTGTTGCAATTGGTGCTCACACACACACTGTTACAATTGGTGCTCATACCCATAAAGGCACAGTAACTTTGCAGTCATCTGAACATACTCACTCAGGTACTACGGGTGCTACAGGTGCTGGTCAAGCATTTAGCGTTGAACAACCATCCTTTGTGGTTTATGTATGGCAAAGAACCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
27f74a2a6f0b4671ac2221cda7333ad97df5688b2dc9b0655877381a7ceca908
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7251
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50