Protein

View in Explore
Genbank accession
QIG77995.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,58
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MLIARNVTPQIIAPGEMVDVYLRRSPLREEREHFQIPAGLSIDEIITCCGLEPVRLHIAIGGHVIEQKNWARVRVKPGVSVTIVKVPGKGALRMIAGLVVALAAAVFAPWLAGALLPGLAGTAAGSIATGLIGAGISLAGSLIINALFPIAKPSSLPNTTTLYSIGGAQNQASQYGAIPEIFGTHRISPPYAAGAYTELVGDDQYLRMLFVVGYGPIAVSDLKIGETAISKFEDVKYKVIEDHTVTPPTLYTKPVYQEDVSVLLDQPTGWVQRTTADNVDEISVDVSAPSGIYRLKAKDGKRVNYTVTIDVQYKLSSSSTWISLGTLNLSDGPTQELRFDLTANSPQAIRRTMTQAVARGKYDIRLSKSSPDYSGKDNVSETVYWTALRGRRNEPVISFTKPLTLIEMRIKATGQLNGTVNTLNCIASPKIRSWNGTTWASGQVTRNPADHFRQVLQGNGNARPVDGSSIDLVSLQDWHDYCAAKGFTFDLVANEQKSVYDRLTEIAAAGRAAVSFRDGRWGVVWDIADSPIVQHFSPRNSANFSSTRAYVEMPHGFRVSFINRDNGYLNDERVVYDDGYTEANATKFEGLDFPGVTDKDLIWKHGRYHLAQLRLQRETYSLDTDFENLVCTRGDRVRVNHDVVLWGAGSARVRSVTASPEGVVLDDTLRMEAGKTYSMRFRLADGSSIVRQITGIDGEFRSFAFSDAGALPTVGDLAQFGEVGFESVVLRVKSISARQDLSARLELVDDAPAILTADTGTIPEFQTGIPPVPDYRESPPTAFSYVETIWTTTPATSAIDIAWQAPDAGAAASYIVQYRASGDDQWITASSVSAPTIRLIDLATGVYDARIRAVFANGELSSFLTGSFTCAIFASNPADIEDFRVSISGDVAMLQWTLQADQALSHCEIRFTPATAGATWQTASQLRTNVAGLQAQVPAMVGTYLIKAVNYAGLMSVNAALVVSTVNPLTAFNAVEALQEDPSFLGTKTNVLVAGGALRLDTGSDIFELVDWFSVEDYFLSLGGYVSEGIYEFADIVDLGSVYTSRVSANVSAFGDLASLDLFTRADWFDVPEYFGLASDSLWNVRVEVSSTNDNPAGSPTWSDWAELTTADVSARAYRFRARLLSLQFDVTPVVETLAVTVDMPDRVIAENDLLVTTSGRTISFSPAYYALSGIAIAGQNMQTGDYYQITGKTASGFTIVFRNASGTPVARTFDYVAKGYGYVQ
Physico‐chemical
properties
protein length:1225 AA
molecular weight: 132829,06680 Da
isoelectric point:5,07620
aromaticity:0,09469
hydropathy:-0,01992

Domains

Domains [InterPro]
DC_0129
STR
2–990
DC_0129
IPR055385
ATT
256–390
IPR055385 IPR032876 IPR013783 DC_1836
NF040662
Unmapped
277–694
NF040662 IPR003961
IPR036116
STR
797–863
IPR036116
QIG77995.1
1 1225
Architecture
STR
ATT
STR
ATT
STR
RBD
STR 2-255 | ATT 256-390 | STR 391-494 | ATT 495-652 | STR 653-990 | RBD 991-1221 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG77995.1
1 1225
Domain Start End Length (AA) Confidence
N-terminal 1 978 978 0,8509
Central domain 979 1177 200 0,1728
C-terminal 1178 1225 47 0,9661
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-978
Central
979-1177
C-terminal
1178-1225

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y3_56_1
[NCBI] 		2509779 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG77995.1 [NCBI]
Genbank nucleotide accession
MN988502.1 [NCBI]
CDS location
range 29552 -> 33229
strand +
CDS
ATGTTGATAGCCCGAAATGTGACGCCCCAGATCATCGCCCCGGGTGAGATGGTCGACGTCTATCTGCGTCGCTCGCCGCTACGGGAGGAGCGGGAGCATTTCCAGATTCCGGCCGGGCTTTCGATCGATGAAATAATTACCTGCTGTGGGCTCGAACCTGTTCGCCTGCATATCGCTATCGGCGGCCACGTCATCGAGCAGAAGAACTGGGCACGCGTACGCGTGAAGCCAGGTGTCTCTGTCACCATCGTCAAGGTGCCAGGCAAGGGCGCTCTCCGTATGATCGCCGGTCTTGTCGTCGCCCTCGCAGCCGCGGTGTTTGCACCATGGCTGGCTGGCGCTTTGCTGCCCGGTTTGGCTGGAACTGCCGCAGGTTCGATTGCAACCGGGCTGATCGGTGCCGGCATTTCGCTCGCTGGATCCTTGATCATAAATGCGCTGTTTCCGATCGCGAAACCATCTAGCCTGCCGAACACGACCACACTCTATTCAATCGGTGGCGCGCAGAACCAGGCATCGCAGTACGGCGCAATCCCCGAGATTTTCGGCACGCATCGCATATCCCCGCCTTACGCGGCCGGCGCCTATACCGAACTTGTGGGCGATGACCAATATCTGCGCATGCTCTTCGTGGTCGGCTATGGACCGATCGCCGTTTCCGATTTGAAGATTGGCGAGACGGCGATCTCGAAATTCGAAGACGTCAAATACAAGGTTATCGAGGACCACACAGTCACGCCGCCGACGCTCTACACGAAGCCGGTCTATCAGGAGGACGTGTCCGTTCTCCTCGACCAGCCGACGGGATGGGTGCAGCGGACGACAGCAGACAATGTCGACGAGATTTCAGTCGACGTTAGCGCGCCAAGCGGCATTTATAGGCTAAAGGCAAAAGACGGCAAGCGTGTAAACTACACGGTCACGATCGATGTCCAGTATAAGCTCTCGAGCAGCAGCACATGGATATCTCTTGGCACCCTCAACTTGTCAGATGGCCCGACGCAGGAATTGCGGTTTGACCTGACGGCAAACTCGCCGCAAGCAATCCGGAGGACGATGACGCAGGCTGTTGCTCGTGGCAAATACGACATACGGCTCAGCAAGTCTTCGCCAGACTACAGCGGCAAGGATAATGTTTCCGAAACCGTCTATTGGACGGCGCTTCGCGGCCGGCGCAATGAACCTGTCATCAGCTTCACGAAGCCGCTGACGCTGATAGAGATGCGGATCAAGGCAACGGGCCAGCTAAACGGCACCGTGAACACGCTCAACTGCATCGCTAGCCCAAAGATCAGGTCTTGGAACGGAACGACGTGGGCCTCCGGCCAAGTCACCCGCAATCCGGCCGATCACTTCCGGCAGGTTTTGCAGGGCAACGGCAATGCGCGACCGGTCGATGGCTCTTCGATCGACCTGGTCAGCCTGCAGGATTGGCACGACTATTGCGCTGCCAAGGGTTTCACTTTCGACCTCGTGGCAAATGAGCAGAAGTCTGTTTATGATCGGCTCACCGAGATCGCGGCCGCCGGCCGAGCGGCTGTCTCGTTTCGCGATGGCCGGTGGGGTGTCGTCTGGGACATCGCAGATTCGCCGATAGTCCAACACTTTTCGCCGCGGAATTCGGCAAACTTTTCGTCCACGCGCGCGTATGTTGAAATGCCGCACGGCTTCCGTGTCAGCTTCATCAACCGTGACAACGGCTATCTGAATGACGAGCGCGTCGTGTACGACGATGGTTATACCGAAGCCAACGCCACGAAATTTGAAGGGCTCGACTTTCCCGGCGTCACCGATAAGGATCTGATCTGGAAGCACGGACGCTACCATCTAGCGCAGCTTCGGCTGCAGCGAGAGACCTATTCCCTCGATACCGACTTCGAAAATCTCGTTTGCACGCGAGGCGATCGTGTCCGCGTCAACCATGACGTCGTGTTGTGGGGCGCAGGCTCAGCGCGCGTGCGGTCGGTAACGGCTTCGCCCGAGGGCGTTGTGCTCGATGACACGCTGCGCATGGAGGCGGGTAAGACCTATTCCATGCGGTTTCGCCTGGCTGACGGATCGTCGATCGTCCGCCAGATCACTGGCATCGATGGCGAGTTCAGGAGCTTCGCGTTTTCGGACGCTGGTGCGCTGCCCACGGTCGGTGATCTTGCCCAGTTTGGCGAGGTGGGCTTTGAAAGCGTTGTCCTGCGCGTCAAGAGCATCTCTGCTAGGCAGGATCTATCCGCCCGGCTTGAACTGGTTGATGACGCGCCTGCAATCCTCACGGCCGACACCGGCACGATCCCGGAGTTCCAGACGGGAATTCCGCCAGTTCCAGACTACCGTGAGTCGCCACCCACCGCATTCTCTTATGTGGAGACAATATGGACCACGACGCCAGCTACGTCGGCAATCGATATAGCTTGGCAGGCACCAGATGCTGGCGCGGCCGCTTCCTACATTGTGCAGTATCGAGCCAGTGGTGACGATCAGTGGATCACGGCCTCGAGTGTCAGCGCGCCGACAATTCGGCTAATTGACCTCGCAACTGGAGTTTATGACGCTCGCATCCGGGCAGTTTTCGCAAATGGTGAGTTGTCCAGTTTTCTGACTGGATCATTCACGTGTGCGATTTTCGCTTCGAATCCAGCCGACATCGAAGATTTCCGCGTCTCCATCAGCGGCGACGTGGCGATGTTGCAATGGACGCTGCAGGCTGACCAAGCTCTGTCACATTGCGAAATCAGGTTCACACCTGCCACTGCCGGCGCCACATGGCAAACAGCCTCGCAGCTAAGAACCAACGTGGCTGGCTTGCAGGCGCAGGTGCCGGCGATGGTCGGAACCTATCTGATCAAGGCGGTGAACTATGCCGGGCTGATGTCGGTGAACGCCGCCTTGGTGGTTAGCACCGTCAATCCGCTCACCGCCTTCAATGCTGTCGAAGCACTGCAGGAGGATCCTAGCTTCCTTGGCACCAAGACGAATGTCTTGGTTGCTGGTGGAGCGCTGCGACTCGACACCGGCTCGGACATATTCGAGTTGGTCGACTGGTTCTCTGTTGAGGACTACTTCCTGTCTCTCGGCGGATACGTCAGCGAGGGGATTTACGAGTTTGCAGACATCGTCGATCTCGGTTCCGTCTATACGTCTCGTGTTTCGGCAAATGTCAGTGCTTTCGGCGACCTAGCCAGCCTTGACCTGTTCACTCGGGCAGATTGGTTCGACGTTCCGGAGTATTTCGGCCTGGCCTCCGACTCGTTGTGGAATGTTCGAGTAGAGGTCTCCTCAACTAACGACAACCCAGCAGGATCGCCAACATGGAGCGATTGGGCGGAGTTGACGACTGCTGACGTGTCCGCGCGCGCCTACCGGTTCCGAGCACGACTCCTGTCGCTCCAATTCGACGTGACGCCTGTTGTTGAAACCTTGGCGGTTACAGTGGACATGCCTGACCGCGTCATCGCCGAAAACGACCTTTTGGTCACGACATCAGGGCGCACGATCAGCTTCTCGCCAGCATACTACGCACTGAGCGGCATCGCGATCGCGGGGCAAAACATGCAGACCGGCGACTATTACCAGATCACCGGGAAAACCGCCTCTGGCTTCACAATAGTATTCCGCAACGCATCGGGCACGCCGGTCGCGCGCACCTTCGACTACGTAGCAAAGGGCTATGGATACGTTCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d457cd655f1b6fef12e30ed1d048a3aefd98c44a41a353435ce199a2ee1cc0b4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2820
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank