Protein

View in Explore
Genbank accession
AUR97824.1 [GenBank]
Protein name
pectin lyase fold/virulence factor
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAQIDLDQAVTRVNVAADVLDKATKFIADVSNGDEDTTITNPTPSEPDSPSIRKMVKDKVEAAIRDGDITGSLPIRDKVAVSTTIGAAHINGIIPVQTVGTTSLTMTLPTAPTLGTLVGFIDYDGNWSKAGIRIKAADLLSGSNKDIVLQRANMCIVFQFIDATQGWKVIYGTPGQGDVDWVKVDSDSVLERGLGYWVDTSTANTEMIITLPADPAVDDIVGIGDYNGSFGVRGCRVVLNGKKFMGQSENLILETSNLVMLAQYVDDTIGWKIISGVGLGGAGGDYLSLETASETFSNPNLLSNHNFLVPSPDAITHPSSTPTDYMVGTQIFSGVFVGSNVVGLTYINGRVKWDSGTIYFVKVNAGGLEYVTQFVASVADFDGKPRMRGVSFALIGDEYRVTVGVDALEDESANATPLGSVKFEQGDVATGHEVQSAKGQVYTFGSVAEMVSIGAPIGSLVKTTAYHGGWVAKLEEPVGGAEYVIVQGNRGDDIADHNIGGTTAILIIRNGEINVDQCGARGDYFSDHDQQTVNLTPTDDTKAFQAAVKKAFHIKMSDRIYYAEDTHGLVDVTFIDNGTARSQYRITGASRMRSGVYYNGSGTLFKCESRGGSNTYFEHFRMKNIMNETDSSSSIVFKESTSVAVKLESATRVTFNDVHIQGFGNGIFAENVYGAWCEFLSIKNSELFRNLINIPLRVNGGTDSFHGLNTEDLIIHTVPNGYGFSVGEGCYIYNAKISCGFFGTGNPSEVSWVMMAGAGGNSNCEQTEFAIWSERGGKVVIEDGAKVDGEGYWHEHTGPLVIEDANTDDLKGFLVFDHGNRTWSSKQPSTTSWGRDTISRFSPGLSAGASPLAGVHAVDGAGRSTVLAATNSSQSGVFFAFGDAFYNLVPKSYIDNFGAFHPNESTEGRFSYTTSAPAQGSSSHGIGSIVQNQGSQRDIDARPAYSYTADTDGATPFALALQPIYASGTRPSSPITGQAMWYAPTSEPSWNNGSGWVEATVSASDATLKTDPEEITDNECLAALEMKLVKFKMLDSVAEKGDSARYHYGVIAQQCIGVLENYGIDINTFAPILHTPVFDDDGNLVSHIWKVRYQELLVMRSEAIARRISGLI
Physico‐chemical
properties
protein length:1112 AA
molecular weight: 119335,65990 Da
isoelectric point:4,82389
aromaticity:0,09173
hydropathy:-0,14811

Domains

Domains [InterPro]
DC_1946
ATT
60–180
DC_1946 IPR011050 DC_2290 cd10144
IPR030392
CHP
1004–1063
IPR030392
IPR030392
CHP
1004–1112
IPR030392
IPR036388
RBD
1004–1112
IPR036388
AUR97824.1
1 1112
Architecture
ATT
STR
RBD
ATT 60-180 | STR 510-1003 | RBD 1004-1112
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR97824.1
1 1112
Domain Start End Length (AA) Confidence
N-terminal 1 536 536 0,7459
Central domain 537 817 282 0,9811
C-terminal 818 1112 294 0,9477
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-536
Central
537-817
C-terminal
818-1112

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.244.A._10N.261.54.C3
[NCBI] 		1881412 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR97824.1 [NCBI]
Genbank nucleotide accession
MG592609 [NCBI]
CDS location
range 84775 -> 88113
strand -
CDS
ATGGCACAAATTGATTTAGATCAAGCGGTAACCCGAGTCAACGTAGCAGCTGACGTTCTCGACAAAGCGACCAAGTTCATCGCTGACGTATCTAACGGTGATGAAGACACAACCATCACTAACCCTACTCCTTCAGAACCAGATAGCCCTTCAATTCGCAAGATGGTTAAGGATAAAGTTGAGGCTGCTATCCGCGATGGTGATATCACAGGTAGTCTACCTATCCGTGACAAAGTGGCGGTCAGCACTACAATCGGGGCGGCTCACATCAACGGTATCATCCCAGTTCAGACTGTTGGTACTACATCATTGACTATGACTCTACCTACAGCGCCAACGTTGGGGACTCTAGTAGGCTTTATAGATTATGATGGTAACTGGTCTAAGGCTGGTATCAGGATCAAAGCGGCAGACCTACTATCAGGAAGCAACAAAGATATCGTATTACAACGAGCTAACATGTGTATTGTGTTTCAGTTCATTGATGCAACTCAAGGCTGGAAGGTCATCTACGGTACGCCAGGACAAGGTGATGTAGATTGGGTTAAGGTAGACTCCGATTCCGTCTTAGAAAGGGGTTTAGGCTACTGGGTGGACACATCTACAGCCAACACGGAAATGATCATCACTCTACCTGCTGATCCAGCTGTTGATGACATCGTTGGTATCGGTGATTACAACGGTTCATTTGGTGTTCGTGGGTGTAGGGTTGTATTGAACGGTAAGAAGTTCATGGGGCAATCCGAAAACCTTATATTAGAGACCAGCAATTTAGTTATGTTGGCTCAATACGTTGACGATACGATCGGTTGGAAGATTATTTCGGGTGTTGGTCTCGGAGGAGCAGGGGGCGATTACCTTTCGTTAGAGACAGCTTCTGAAACTTTCAGCAACCCGAACTTATTATCAAATCACAATTTCTTGGTTCCTTCACCGGACGCAATCACCCACCCAAGTTCAACGCCAACTGATTATATGGTTGGTACTCAGATATTCAGCGGCGTGTTTGTTGGGTCTAACGTTGTTGGGTTGACGTACATCAACGGGCGCGTCAAGTGGGACAGTGGTACAATATATTTTGTGAAGGTTAACGCTGGCGGTTTAGAATATGTCACACAATTCGTAGCTTCTGTTGCAGACTTTGACGGCAAGCCGCGTATGCGTGGTGTGTCGTTTGCTTTGATTGGTGATGAATATCGCGTGACGGTTGGCGTCGATGCACTTGAAGATGAAAGCGCTAATGCCACTCCGCTAGGGTCTGTTAAGTTTGAGCAGGGAGATGTGGCTACGGGGCATGAGGTGCAGAGCGCTAAGGGTCAGGTTTATACGTTTGGTAGTGTTGCTGAAATGGTATCAATAGGAGCTCCTATTGGTTCTTTAGTTAAAACCACTGCGTACCACGGTGGTTGGGTTGCCAAGCTTGAGGAACCCGTCGGTGGTGCTGAGTACGTAATTGTCCAAGGGAATAGGGGTGATGATATTGCTGATCATAATATTGGTGGCACTACTGCTATCTTGATTATTCGCAACGGTGAAATTAACGTTGACCAGTGCGGAGCAAGGGGTGACTACTTTTCCGACCACGATCAGCAAACGGTTAATTTAACACCTACAGATGATACTAAGGCATTTCAAGCAGCAGTAAAAAAAGCGTTTCATATTAAAATGTCGGATAGAATCTATTATGCTGAAGATACGCATGGCCTTGTAGATGTGACATTCATTGATAATGGAACCGCAAGAAGTCAATACAGAATTACTGGCGCATCAAGAATGAGAAGTGGTGTTTACTATAACGGCTCTGGTACGTTATTTAAGTGTGAATCAAGGGGTGGATCAAATACCTATTTCGAGCACTTTAGAATGAAAAACATCATGAATGAGACTGATAGCTCATCTAGTATTGTTTTTAAGGAATCAACTTCTGTAGCTGTAAAGTTAGAGTCAGCCACAAGAGTTACTTTTAACGATGTTCACATACAGGGATTTGGTAATGGTATATTTGCTGAAAATGTATACGGCGCGTGGTGTGAGTTTTTATCAATTAAGAACTCAGAGTTATTTAGGAACTTAATAAACATACCGCTAAGAGTGAATGGTGGTACTGATTCGTTTCATGGTTTAAATACTGAAGATCTAATTATACATACAGTCCCTAATGGTTACGGCTTTAGCGTTGGCGAAGGTTGTTACATATATAACGCAAAGATATCTTGCGGATTCTTTGGTACTGGAAATCCTTCCGAGGTTTCTTGGGTAATGATGGCTGGTGCTGGTGGCAATTCTAATTGTGAGCAAACTGAGTTTGCCATTTGGTCTGAGCGCGGTGGTAAAGTTGTTATAGAGGATGGGGCTAAGGTTGACGGTGAGGGGTACTGGCATGAGCACACTGGTCCTTTGGTTATCGAGGATGCGAATACGGATGACCTTAAAGGCTTCTTGGTTTTTGATCATGGAAATAGAACATGGTCAAGCAAGCAACCATCAACAACATCATGGGGCAGGGATACTATTTCGAGATTTTCCCCTGGACTTTCAGCAGGTGCAAGCCCCTTGGCGGGAGTTCACGCTGTTGATGGAGCGGGAAGATCTACAGTCTTAGCGGCAACGAATTCGTCTCAGTCAGGGGTATTTTTTGCTTTTGGCGACGCATTCTATAACTTAGTCCCTAAAAGTTATATAGATAACTTCGGTGCGTTTCACCCAAATGAGTCAACAGAGGGAAGATTCTCATACACTACTAGCGCTCCAGCCCAAGGCAGCTCCTCTCACGGTATTGGCTCTATAGTTCAGAATCAAGGGTCGCAGCGTGATATTGATGCTAGACCGGCGTACTCCTACACGGCAGATACCGATGGGGCTACACCTTTCGCTTTAGCTTTACAGCCGATATATGCATCTGGGACAAGACCTTCATCACCAATAACAGGTCAAGCGATGTGGTACGCCCCCACCTCTGAGCCTAGTTGGAACAATGGATCGGGGTGGGTTGAAGCAACCGTCTCCGCGTCTGATGCTACACTAAAGACCGATCCTGAAGAAATTACTGATAACGAATGTTTAGCAGCATTGGAAATGAAATTAGTTAAATTCAAGATGCTAGATTCAGTTGCCGAGAAAGGGGATAGCGCTAGATATCATTACGGCGTGATTGCTCAGCAATGTATTGGGGTGTTAGAAAATTACGGCATAGACATCAATACGTTTGCTCCAATATTGCATACGCCCGTGTTTGATGATGATGGAAATCTAGTGAGCCACATATGGAAGGTGAGATATCAAGAGCTACTAGTAATGAGAAGTGAAGCCATCGCAAGGAGGATTTCTGGGTTGATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
92653f39bbec8373c020151fcf94202654695e4c92f0fe1499d3ba4d6f5c2f89
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6606
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank