Protein

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Genbank accession
ASV42801.1 [GenBank]
Protein name
EF hand domain/PKD domain protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,77
Protein sequence
MAIYFENQEVLNIHMGGTHIQEVTVNGIKVAALPEVVSQPQGGTITTKQTLTLTVGVETLGSSVSYQWYLNNGMVSGANSSSYVFVPPAAGNYSIKCRATSFGGFTETQVASVTVNQAQLAWTNVSTFAASSPPILVRAGNNLLLLAYNSAYSTNGGATWKSLPQGLGTGVPSFQATPKGAASDGSTVVVVYDGGYSAKSTNGGVSWVSLPRFFFSGSSAVNINCVAVSGNTIVQAGASGYARRSTDGGSTWSNLPRGLGMRADGTITKMHGRGNVIVAGNSEQQGSDPTTLTISTNGGATWTGKNIGSPDGSGSRMATMCHVVDSSVIIYGMQMHTAISRNGGSTWTWLPSGLNSGSGSSSTTILCMDSVGDTIVAGTYNGSAAVSYNKGLSWSAVPTKGLGTGQASESVEAMCAFPDGRFFAGVGRSTIYVGKGQ
Physico‐chemical
properties
protein length:437 AA
molecular weight: 44807,45790 Da
isoelectric point:8,73007
aromaticity:0,08009
hydropathy:-0,01098

Domains

Domains [InterPro]
DC_1032
ATT
1–76
DC_1032 SSF110296
cd00146
ENZ
36–115
cd00146 cd15482
IPR015943
STR
83–269
IPR015943 IPR015943
ASV42801.1
1 437
Architecture
ATT
STR
ATT 1-76 | STR 77-433 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASV42801.1
1 437
Domain Start End Length (AA) Confidence
N-terminal 1 118 118 0,5788
Central domain 119 426 309 0,8332
C-terminal 427 437 10 0,8087
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-118
Central
119-426
C-terminal
427-437

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF15
[NCBI] 		1983598 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASV42801.1 [NCBI]
Genbank nucleotide accession
KY883642 [NCBI]
CDS location
range 345 -> 1658
strand +
CDS
ATGGCAATTTACTTTGAAAACCAAGAAGTGCTCAACATCCACATGGGGGGCACTCACATACAAGAAGTCACAGTCAATGGGATTAAGGTGGCTGCCCTCCCTGAGGTCGTATCTCAGCCCCAAGGAGGAACAATAACCACTAAACAAACCTTGACTCTTACCGTAGGAGTCGAGACTTTGGGTTCTTCTGTGTCGTACCAGTGGTACTTGAACAATGGTATGGTGAGTGGAGCAAACTCAAGCTCGTATGTGTTTGTCCCTCCTGCGGCAGGGAATTATTCCATAAAATGTAGAGCCACCTCTTTCGGAGGCTTTACGGAAACTCAAGTTGCTAGTGTTACCGTGAACCAAGCGCAGCTGGCTTGGACAAATGTGTCGACTTTTGCAGCTTCGAGTCCTCCCATCTTGGTAAGAGCTGGCAACAATCTTTTACTTCTGGCATATAACTCGGCGTACAGCACCAACGGAGGAGCGACTTGGAAATCTCTACCCCAAGGGCTGGGCACGGGGGTTCCGTCATTCCAAGCCACACCAAAGGGAGCGGCTAGCGACGGCAGTACGGTAGTAGTGGTGTATGATGGCGGATATAGCGCTAAAAGCACAAACGGCGGCGTATCTTGGGTTTCGCTTCCTCGGTTCTTTTTTAGTGGCAGTTCGGCAGTTAACATAAACTGCGTCGCTGTGTCAGGAAACACCATTGTTCAAGCGGGAGCAAGTGGTTACGCCAGACGCTCCACCGATGGCGGCTCAACATGGAGCAATCTTCCTAGAGGGTTGGGCATGCGAGCGGACGGAACCATAACCAAGATGCACGGTCGGGGGAACGTGATTGTGGCAGGGAACAGCGAACAGCAAGGTTCCGACCCAACAACGCTGACTATCTCAACCAACGGCGGCGCGACTTGGACAGGGAAAAATATCGGTTCTCCTGATGGAAGCGGCAGTCGGATGGCTACCATGTGCCACGTGGTGGACAGCTCGGTAATCATCTACGGGATGCAGATGCATACCGCCATATCGAGAAACGGCGGCTCTACGTGGACTTGGCTGCCTTCGGGGTTAAACTCAGGCTCAGGCTCAAGTAGTACAACTATACTGTGTATGGATTCCGTCGGAGATACTATAGTTGCAGGAACCTACAACGGGTCTGCGGCCGTATCATATAACAAAGGATTATCGTGGTCAGCAGTGCCCACCAAAGGACTCGGGACGGGACAGGCGTCTGAATCTGTGGAAGCTATGTGTGCTTTTCCTGATGGAAGGTTTTTCGCAGGGGTTGGTCGTTCAACGATATACGTCGGGAAGGGACAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ad34d4a8302dd336b8a388304cf2776c64476ee687666b12d879ea5932197531
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8473
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50