Protein

View in Explore
Genbank accession
QJQ82606.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATTEVFYNGDNSDVTFTIPFEYLEESDVKVSVGGTLKTQDTDYTFSTLTEITFTTAPPTGVNNVRIFRDTDIDSGVRNEFFAGSAIRAQDLNDDFLQVLYSAQELEDQFVTKTDGEFDTNIDMNSNRITELGDPVNAQDAVTKQYLEDNYFDDGTETILSSETWPDNDTTIATTASIDNRVDSKIDLAITGDVLIDNSGLTKSTNAGQTTLGIGAGSVDLDRIKAADIITSSESNPDNDTTIATTAKIDDMIDAAITGDIAADSTGLSVTNDGDGTITLGITQGGVDLDRINPADVITLAEQNAGPTTDDDSIFTSSAASKRFDTLVQTGTPANSPYPVGKTWLQNDDDQTLKIWNGSAWLDVASGGSFRTQDKVIYVDKTGGDDNKTGHRISGPKLTIKEAINDINADVDTSIKTAGSGYTDATYNNVPLTGGTTGSGLTATITVSGGAVTSVTNVANSTLQEYQIGDILSAADSNLGGGGGSGFELEVTGGGDGMTVIVAAGTYQEIAPIQIKRRNVSIIGMALRSCLVHPTPATEKPASAGNSALFELNSGSFIQNLTLTGMQASNSGNNSIDSDLPDKQGWNFAFYNNAFITKSPYVQNCTNFSDSQIDNSNLNAHNPAGGQAGDLTNAPTGGGMLIDGSVPKTTSPLRSMVADSYTHVGLNGPGILVTNNGYAQCTSSYAFFNKYHIKALNGGQANLAASTTDFGEKGLVADGKSTAPIFSGQVAGAAADGDITFDVDNISAGTGWFGDDTKPASNMLVTVNSVTYPILSSTVITGGHRVTISRPNASNRSQNDGLNGAIADNAAVQFFLRSQIASSGHTMEYVGSGMDYDALPENGGVPDETKQITELNNGKVWTAITDHNGKFKIGGNQTDDPIFEVDQQLGFITIPTGSIAFDLLSDTTPQLGGDLDTNDFKITSAGNNNVHIGPHGTGKIRVDAAIITHADNDLILDPHGTGDIDASTHTIKNVVDPTNAQDAATKAYVDSTVAGIDEVVEDLTPQLGGNLDVQARTITTSTTNGPINLDPGGTGGVVVLGNEDASADNPGKVVFNCEQNSHGVTVKAPLHADIAGDNGSYSLTLPTGVPDTGGKALISTTGGVLSWGFAGGAKGGSNDQVFFENDITVTTSYSITANKNAMTAGPITINSGATVTVPSGSTWTII
Physico‐chemical
properties
protein length:1166 AA
molecular weight: 121352,07670 Da
isoelectric point:4,18843
aromaticity:0,06175
hydropathy:-0,26329

Domains

Domains [InterPro]
DC_0126
ATT
2–271
DC_0126 DC_0582 DC_0763
IPR005604
ATT
4–110
IPR005604
QJQ82606.1
1 1166
Architecture
ATT
STR
STR
ATT 2-271 | STR 324-373 | STR 475-1084 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QJQ82606.1
1 1166
Domain Start End Length (AA) Confidence
N-terminal 1 465 465 0,9093
Central domain 466 746 282 0,9265
C-terminal 747 1166 419 0,3918
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-465
Central
466-746
C-terminal
747-1166

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SBP1
[NCBI] 		2735125 Uroviricota > Caudoviricetes > Autographivirales > Spiovirus > Spiovirus sbp1
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QJQ82606.1 [NCBI]
Genbank nucleotide accession
MT424636.1 [NCBI]
CDS location
range 32210 -> 35710
strand +
CDS
ATGGCTACAACTGAAGTATTTTACAATGGTGACAACTCTGACGTCACCTTTACAATTCCATTTGAATATCTAGAGGAATCCGACGTTAAAGTTTCTGTCGGAGGTACCTTAAAAACTCAAGACACTGATTACACGTTTTCGACTCTTACTGAGATTACGTTTACTACTGCACCTCCAACTGGTGTAAACAACGTAAGGATCTTTAGAGATACGGACATTGATAGTGGAGTTCGCAATGAATTTTTTGCGGGCTCTGCCATCCGTGCTCAAGACCTTAATGATGACTTTTTACAGGTACTGTATTCAGCGCAAGAGCTTGAAGACCAGTTTGTAACTAAAACTGACGGTGAGTTCGATACTAACATTGATATGAACAGCAACAGGATTACCGAACTGGGTGATCCTGTTAACGCACAAGACGCTGTTACCAAGCAGTACCTGGAGGACAACTACTTTGATGATGGTACTGAAACCATCCTTAGCAGTGAAACTTGGCCTGACAACGACACTACGATTGCTACCACTGCATCTATTGATAACCGTGTTGATTCTAAAATCGACTTGGCTATCACTGGTGATGTGTTGATTGACAACTCTGGTCTTACTAAGTCTACTAATGCTGGTCAAACAACCCTTGGTATTGGTGCAGGAAGTGTTGATCTTGATAGGATTAAAGCTGCTGACATCATCACATCTAGTGAGTCTAACCCTGACAACGATACGACTATCGCTACTACGGCAAAGATCGACGACATGATCGATGCTGCTATCACTGGCGATATTGCTGCTGATAGCACAGGGTTAAGTGTTACCAACGATGGTGACGGAACCATTACTTTAGGTATTACTCAAGGTGGTGTTGATCTAGACCGTATTAACCCAGCTGACGTTATCACACTGGCAGAACAAAATGCCGGTCCTACTACAGATGACGACAGCATCTTTACTTCTAGTGCTGCTTCTAAACGGTTTGACACTTTGGTTCAAACTGGCACTCCCGCTAATTCTCCTTATCCAGTCGGTAAAACCTGGCTGCAAAACGACGACGATCAGACCCTAAAAATCTGGAACGGTTCAGCTTGGCTAGACGTTGCGTCTGGCGGTTCTTTCCGAACCCAAGACAAAGTCATCTATGTTGATAAAACTGGTGGTGATGATAACAAAACCGGTCACCGCATTAGTGGTCCTAAACTAACCATTAAAGAAGCTATCAACGACATTAACGCAGATGTTGATACGTCTATTAAAACTGCAGGTTCTGGCTACACTGACGCTACTTATAACAACGTTCCTCTTACTGGAGGTACGACTGGATCAGGACTGACCGCAACGATTACTGTTTCTGGTGGCGCAGTTACTTCAGTCACTAACGTTGCTAACTCTACGTTGCAAGAGTATCAAATTGGTGACATTTTGTCTGCTGCTGACTCTAACCTTGGCGGTGGCGGTGGTTCTGGCTTTGAGTTGGAAGTGACCGGTGGTGGCGATGGTATGACCGTTATTGTGGCTGCTGGCACCTACCAAGAGATTGCACCTATCCAAATTAAACGTCGTAACGTTTCTATTATCGGCATGGCGTTGCGTAGCTGTCTTGTGCATCCTACGCCTGCAACTGAAAAACCTGCATCTGCTGGTAACTCTGCGCTGTTTGAGTTGAACAGTGGTTCGTTTATTCAGAACCTGACGTTGACTGGTATGCAAGCCAGTAACTCCGGTAACAACAGTATTGACTCTGATCTGCCTGATAAGCAAGGCTGGAACTTTGCGTTCTATAACAACGCATTTATTACTAAGTCGCCTTACGTTCAGAACTGTACTAATTTCTCTGACAGCCAGATTGACAACAGCAACCTTAATGCACACAACCCTGCTGGTGGACAAGCTGGTGACCTTACCAACGCTCCTACCGGTGGCGGTATGTTAATTGACGGCTCTGTGCCTAAGACCACAAGTCCTTTGCGGTCGATGGTTGCAGACAGCTATACCCACGTTGGTCTTAACGGACCTGGCATCCTTGTTACTAACAATGGTTACGCACAGTGTACATCTAGCTACGCCTTCTTTAACAAGTATCATATCAAAGCACTGAATGGTGGTCAAGCCAACCTGGCTGCGTCTACCACTGACTTTGGTGAGAAAGGATTGGTTGCTGATGGTAAGTCTACTGCGCCTATCTTTAGCGGACAGGTTGCAGGTGCTGCTGCCGATGGAGATATTACGTTTGACGTAGATAACATTTCTGCAGGCACTGGTTGGTTCGGTGATGACACCAAACCGGCAAGTAATATGCTTGTTACTGTTAACAGCGTAACCTATCCTATTCTGTCGTCTACTGTTATTACTGGCGGACATAGGGTTACAATTAGTCGTCCTAACGCTAGCAATCGTAGTCAAAACGATGGCCTTAATGGTGCTATCGCTGACAACGCTGCTGTACAGTTCTTCCTTCGTTCTCAGATTGCTTCTAGCGGTCACACGATGGAGTACGTCGGTAGCGGTATGGATTATGATGCACTGCCTGAAAATGGTGGTGTGCCGGATGAAACCAAACAGATTACTGAACTAAACAACGGTAAGGTTTGGACTGCTATCACTGATCACAACGGTAAGTTTAAGATTGGTGGTAACCAAACTGATGACCCAATCTTTGAGGTAGACCAACAGCTTGGTTTCATTACCATTCCTACTGGCTCTATTGCCTTTGACTTGTTGTCGGATACGACTCCACAGCTTGGTGGTGACTTAGACACCAACGACTTTAAGATTACCAGTGCAGGTAACAACAACGTCCACATCGGACCACACGGCACAGGTAAGATTAGGGTTGATGCAGCAATCATCACTCACGCTGACAACGACCTTATCCTTGATCCGCACGGTACTGGTGATATTGATGCTAGTACTCACACGATTAAAAACGTTGTTGACCCAACCAATGCACAAGACGCTGCAACTAAAGCATACGTTGATAGCACAGTCGCTGGTATTGACGAGGTTGTAGAAGACCTTACACCTCAACTTGGTGGTAATCTTGATGTTCAAGCTAGAACCATCACTACCAGCACTACTAACGGTCCTATTAACCTTGATCCAGGCGGTACTGGTGGTGTTGTAGTTCTTGGTAACGAAGACGCAAGTGCTGATAACCCAGGTAAAGTTGTATTTAATTGTGAACAGAATAGCCACGGTGTAACCGTTAAAGCACCGCTTCATGCAGATATTGCAGGTGATAATGGTTCTTACAGTTTAACTCTTCCTACAGGCGTACCAGACACAGGTGGTAAAGCCCTTATTTCTACCACTGGTGGTGTTTTAAGCTGGGGCTTTGCAGGTGGTGCAAAAGGTGGTTCTAATGATCAAGTTTTCTTTGAAAACGATATAACTGTAACCACTAGCTACAGCATTACTGCAAACAAAAACGCAATGACTGCTGGTCCTATTACTATTAATAGCGGTGCAACTGTTACCGTACCTTCTGGCTCTACCTGGACTATTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ae602a8544f46e880b8cd13b4391158252930dc6f4ed6ac889cc03c45ee22b29
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5823
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Programmed transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection Huang,S. 2020-12-30 — GenBank