Protein

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Genbank accession
AGI10652.1 [GenBank]
Protein name
putative receptor binding protein
RBP type
TF
Evidence RBPdetect
Probability 0,75
Protein sequence
MTIKKFTFFSPNGTEFPVSANADAKLYMLLSEKDYSQFLIRHWETPINTALNRIYTNTSLLVGGRYFELYNEAVALNSNATNFVHANIDISNVTNPVTISVETSNNSNKVDINTGVGVLKKCIEVVETNAIGVSAVTKPSGSSILEKIYPVGAYYFSSQPTEPATLFGFGTWSRVKGRGLVGVDESDSALSSGGKQGGSTNPLSQHTITPSSGQFVVARGAGNRHWSSGGAPSNSYAMDTENGGVTVGDNTNHNNWQPFEAAYIWKRIN
Physico‐chemical
properties
protein length:269 AA
molecular weight: 29019,87340 Da
isoelectric point:6,51917
aromaticity:0,10037
hydropathy:-0,28773

Domains

Domains [InterPro]
G3DSA:2.60.520.10
STR
1–139
G3DSA:2.60.520.10 IPR053827
IPR048780
RBD
2–135
IPR048780 IPR053827
SSF141658
STR
2–139
SSF141658
SSF141658
STR
2–150
SSF141658
AGI10652.1
1 269
Architecture
STR
ATT
STR 1-143 | ATT 144-268 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 340
[NCBI] 		1262533 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus cremoris
[NCBI] 		1359 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales
Host Lactococcus lactis subsp. lactis
[NCBI] 		1360 Bacteria > Firmicutes > Bacilli > Lactobacillales > Streptococcaceae > Lactococcus
Host Lactococcus lactis subsp. lactis Il1403
[NCBI] 		272623 Bacteria > Firmicutes > Bacilli > Lactobacillales > Streptococcaceae > Lactococcus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGI10652.1 [NCBI]
Genbank nucleotide accession
KC182542 [NCBI]
CDS location
range 16379 -> 17188
strand +
CDS
ATGACAATTAAAAAATTCACGTTTTTCAGTCCAAACGGTACAGAATTTCCAGTTTCCGCAAATGCTGACGCAAAACTGTACATGTTACTTTCTGAAAAAGACTATTCACAATTCTTAATAAGGCATTGGGAAACGCCTATAAATACAGCTCTCAATAGAATTTATACAAACACAAGTTTATTAGTAGGCGGAAGATATTTTGAACTTTACAATGAAGCAGTAGCCTTAAATTCAAATGCTACGAACTTTGTCCATGCAAATATAGACATTTCTAATGTTACAAACCCAGTGACGATAAGCGTAGAAACTTCTAATAACTCAAATAAAGTTGACATCAATACAGGTGTCGGAGTTCTTAAAAAGTGTATTGAAGTTGTTGAAACAAACGCAATAGGAGTAAGTGCAGTTACAAAACCGTCAGGAAGTAGTATTTTAGAAAAAATTTATCCAGTTGGAGCATATTACTTTAGTTCGCAACCAACTGAACCAGCTACATTGTTTGGATTTGGGACTTGGTCAAGAGTTAAAGGTCGTGGGTTAGTTGGGGTTGATGAATCTGATTCAGCTTTATCTAGCGGCGGCAAACAAGGTGGTTCAACAAATCCGTTGTCACAACACACAATAACTCCTTCAAGTGGACAGTTTGTTGTCGCTCGTGGGGCAGGAAACCGGCACTGGTCTTCTGGTGGAGCTCCAAGTAATTCTTATGCTATGGATACAGAAAACGGCGGAGTCACAGTTGGAGATAACACTAATCATAATAACTGGCAACCATTCGAGGCAGCTTATATTTGGAAACGTATAAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
39e0c885b3c068232868b87dd0bc8fa82af9037a275bd75ea8dbbf52c381a058
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7677
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Investigation of the Relationship between Lactococcal Host Cell Wall Polysaccharide Genotype and 936 Phage Receptor Binding Protein Phylogeny Mahony,J., Kot,W., Murphy,J., Ainsworth,S., Neve,H., Hansen,L.H., Heller,K.J., Sorensen,S.J., Hammer,K., Cambillau,C., Vogensen,F.K. and van Sinderen,D. 2013 23666332 GenBank