Protein

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Genbank accession
YP_005087391.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,66
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MATTEHFYTGNNSTTSFAFTFPYLSNSDVKVELDNVVKTENSSGQTNNDYTINNTNIVFNSAPGTGVAIHIYRTTNVDSAQAQYAAGSSIRAADLNNNQTQLLYSAQEASGQLIRQGDLKDSIINSAKIVDGSVATGDLADGLITTVKIAADAVTGAKIADDQINSEHYIDASIDTQHIADSQITTAKIANSNVTTAKIADSNVTTAKIAADAITGAKIADDQINSEHYVDGSIDTAHIANSQITSAKIADGTIIAGDLASNAVTTAKITDLNVTTAKIAADAITGAKIADDQINSEHYVDGSIDTAHIGNNQVTTAKIAADAVTNAKIADDQIDSEHYVDGSIDTAHIGGSQVTDAKLASNSVTTSKIADGQVTTVKISNGDVTLAKLANDLKQTTISDSDTQLPTSGAVVDYVAAQLQPFGGFEAVATEVAFPNTQPVSGVAISISDAGGVVVNGSGVSTTGRTVGGSTITINGFPSSLYNETLVAGVGLIVTSTGSSQTYNYHKILGKEDDIKQLSDDINDFNARYRVGSSNPSSALDSGDLFFNTSTGKLLVYNGTNSAWEEAQSIGNYYINTISSYSGTGGNSASFNGSAYRFVLSNPGTTAEQHIVSVNGVVQKPNSGTSQPGEGFAIDGSSIIFSSAPASGANFFIITIGSTVNIGTPSNGTVTTDKLTSGAVTTVKIADDAVTTAKLALPLDLADNEKIRLGTGNDIELSHDGTESIILSKTGGLQIKDTGGYMRIRSDELKIQSEANETYIEADANGAVQLFYDNSKKFETYANGCTVTGNLNAGNVDLGDSAKARFGDSNDLEIYHDTENYIKSVTANVNLILESAHDVYIKHGGENMLKCTGDGAVELYYDNQQALKTTDNGILVYGHEGNAAHLYLYADEGDDIADRWVLRAAEGSSQFKLRNIASGAWEESIVANGNGSVELYYDNSKKFETTNLGAQITGELSLTTHLKLLDDQKVVCGNGEDLLIYHDGTHSYLDNSTGTFFVRGDTIKLRGKSADEDLIEAFVNGSVRLYYNNSKKFETTNSGGHFTGKFTFNDSSSNQIAFGDSEDLQIYHNSDQNWIVSGSDNLYLKVADGNNDGKIRLLAADDSNMLECNNGGEVELYYNGSKKVATTVWGFQVYGHLIPQGDDTHDLGASNERWDDVYASNGSINTSDKNQKNTIVESDLGLSFVNKLKPVSYKFNNKTRTHYGLIAQDVETTLSDISKPTSGFAGFIKEDIPDQLYVEDDDIPEGKKVGDVKTAAFTTYGLRYHEFISPLIKAVQELSTEVETLKTKVAALEAA
Physico‐chemical
properties
protein length:1295 AA
molecular weight: 137429,74360 Da
isoelectric point:4,56380
aromaticity:0,07181
hydropathy:-0,30317

Domains

Domains [InterPro]
DC_1263
ATT
1–253
DC_1263 DC_0591 DC_0955 DC_0955 IPR036388
IPR005604
ATT
8–111
IPR005604 IPR052671 DC_0140 DC_0955 DC_0955
IPR030392
CHP
1167–1289
IPR030392
IPR030392
CHP
1167–1214
IPR030392 Coil
YP_005087391.1
1 1295
Architecture
ATT
STR
STR
ATT 1-253 | STR 255-921 | STR 958-1295
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_005087391.1
1 1295
Domain Start End Length (AA) Confidence
N-terminal 1 703 703 0,9523
Central domain 704 902 200 0,3725
C-terminal 903 1295 392 0,8513
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-703
Central
704-902
C-terminal
903-1295

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-SSP2
[NCBI] 		444876 Uroviricota > Caudoviricetes > Autographivirales > Tritonvirus > Tritonvirus PSSP2
Host Synechococcus sp. WH 8017
[NCBI] 		166321 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_005087391.1 [NCBI]
Genbank nucleotide accession
NC_016656 [NCBI]
CDS location
range 40057 -> 43944
strand +
CDS
ATGGCGACAACTGAACATTTTTATACAGGCAATAACTCCACAACGAGTTTTGCCTTTACATTTCCATATTTATCAAACAGCGATGTCAAAGTAGAACTTGACAACGTTGTAAAAACTGAAAACTCAAGTGGTCAAACAAACAATGACTACACCATAAACAATACAAACATTGTATTTAATAGTGCTCCGGGAACTGGAGTAGCTATTCATATTTATAGAACAACTAACGTAGACTCAGCTCAGGCACAATATGCAGCTGGTTCATCAATACGTGCAGCTGACTTAAATAATAACCAAACACAATTACTGTACTCAGCTCAAGAAGCTAGTGGACAATTAATAAGACAAGGAGATTTAAAAGATTCTATAATAAACTCTGCAAAAATAGTTGATGGTTCTGTTGCAACAGGAGACTTAGCAGATGGTCTTATAACAACTGTTAAGATTGCTGCTGATGCAGTAACTGGAGCTAAGATTGCAGATGATCAGATTAACTCTGAGCATTATATTGATGCTTCTATTGATACTCAACATATAGCTGATAGTCAGATAACAACTGCAAAAATAGCTAACAGTAATGTAACCACAGCTAAGATTGCTGACTCAAATGTAACTACAGCCAAAATAGCTGCTGATGCTATTACTGGTGCAAAGATAGCTGATGACCAGATAAACTCTGAGCATTATGTAGACGGAAGTATAGATACTGCTCATATAGCTAATAGTCAAATTACTTCAGCTAAAATTGCAGACGGTACTATTATTGCTGGAGATTTAGCAAGTAATGCTGTTACTACAGCTAAAATTACTGATTTAAATGTTACTACAGCCAAAATAGCAGCTGATGCAATTACTGGAGCTAAAATTGCTGACGATCAAATTAACTCAGAACATTATGTTGATGGGTCAATTGATACAGCACATATTGGAAACAATCAAGTTACTACAGCTAAGATTGCAGCAGATGCAGTTACAAATGCAAAAATAGCTGACGATCAAATTGATTCTGAACATTACGTAGACGGATCTATTGATACAGCTCATATAGGTGGTTCTCAGGTTACAGATGCAAAGCTTGCGTCTAACTCAGTAACAACATCTAAAATTGCTGATGGTCAAGTAACTACAGTTAAGATATCTAACGGAGACGTAACCCTTGCTAAACTAGCGAATGATCTAAAACAAACAACTATATCTGATAGTGATACACAGTTACCAACATCCGGAGCTGTTGTTGATTATGTTGCTGCACAATTACAACCATTTGGTGGATTTGAAGCAGTAGCTACAGAAGTAGCATTTCCTAATACACAACCAGTTAGCGGTGTAGCTATATCTATATCAGATGCTGGAGGAGTAGTAGTTAATGGTTCTGGAGTTAGTACAACTGGTAGAACAGTAGGCGGCTCAACCATAACTATTAATGGATTTCCATCTAGTTTATATAACGAAACATTAGTAGCTGGAGTAGGTTTAATAGTTACTTCTACAGGATCTAGTCAGACATATAATTACCATAAAATACTTGGTAAGGAAGATGATATTAAACAACTTAGTGATGATATAAATGACTTTAACGCAAGGTATAGAGTTGGGTCGTCAAACCCTTCAAGTGCTCTTGATAGTGGTGATTTATTCTTTAATACTAGCACAGGTAAATTACTTGTATATAATGGAACTAATAGTGCATGGGAAGAAGCACAAAGTATAGGTAATTATTATATAAATACAATATCCAGCTATTCTGGTACAGGAGGAAATAGTGCATCATTTAATGGTTCTGCTTACAGATTTGTTCTTTCCAATCCGGGAACTACAGCAGAACAACATATTGTTTCTGTCAATGGAGTCGTTCAGAAACCTAACTCAGGTACAAGTCAACCCGGCGAAGGATTTGCTATTGATGGTAGTTCTATCATATTTAGCTCCGCTCCTGCTAGTGGTGCTAACTTCTTTATTATCACCATTGGATCAACAGTAAATATTGGCACACCAAGTAATGGAACAGTTACTACAGATAAGTTAACAAGTGGTGCAGTAACTACAGTTAAGATTGCAGATGATGCAGTTACTACAGCTAAATTAGCACTTCCACTAGATTTAGCAGATAACGAGAAGATTCGCTTGGGAACAGGTAATGATATAGAGCTTTCTCATGATGGTACTGAGTCAATAATTCTTAGTAAAACTGGTGGTTTACAAATAAAAGATACTGGTGGCTATATGAGAATCAGGTCGGATGAATTAAAGATTCAATCCGAAGCTAACGAGACTTATATAGAAGCTGACGCTAACGGAGCTGTACAATTATTTTACGACAACTCTAAAAAGTTTGAGACGTATGCTAATGGGTGTACTGTTACAGGTAATTTAAACGCTGGTAATGTAGATCTCGGTGATAGTGCAAAAGCTCGCTTTGGGGATTCTAATGATTTAGAAATTTATCATGATACTGAAAATTATATTAAAAGTGTAACTGCAAACGTAAACCTGATTTTAGAGTCTGCTCATGATGTTTATATAAAACATGGCGGTGAAAATATGCTTAAATGTACAGGTGACGGAGCAGTAGAACTATATTACGACAACCAACAAGCCTTAAAAACAACAGACAATGGAATACTTGTTTATGGACATGAAGGAAATGCTGCTCATTTATATCTTTATGCCGATGAAGGTGATGATATAGCTGATAGATGGGTACTTAGAGCAGCTGAAGGAAGTAGTCAATTTAAACTTAGAAACATAGCAAGTGGTGCTTGGGAAGAAAGTATTGTTGCTAATGGTAACGGAAGCGTAGAGCTATATTACGACAACAGTAAAAAGTTTGAGACTACTAACTTAGGAGCACAAATTACTGGAGAGTTATCATTAACAACTCATCTAAAACTTCTTGATGATCAGAAAGTTGTTTGTGGAAATGGGGAAGATCTACTTATTTATCACGATGGAACACACTCTTATCTAGATAACTCAACTGGAACTTTTTTTGTAAGAGGTGATACAATAAAATTACGAGGTAAGTCTGCTGACGAAGATTTAATAGAGGCTTTTGTAAACGGATCAGTAAGACTTTATTACAACAACTCTAAAAAGTTTGAGACTACAAATTCAGGTGGTCATTTTACAGGTAAATTTACATTTAACGATAGCAGTTCTAACCAAATTGCTTTTGGAGATAGTGAAGATCTGCAAATTTATCATAATTCCGATCAAAATTGGATTGTAAGTGGATCAGATAATTTATATTTAAAGGTAGCAGATGGTAATAATGATGGGAAGATCCGTCTTTTAGCTGCTGATGACTCTAATATGCTTGAATGTAATAATGGAGGTGAGGTCGAACTCTATTACAATGGCAGTAAAAAGGTTGCTACTACAGTATGGGGTTTTCAAGTGTATGGACATCTAATACCACAAGGAGATGATACCCATGATTTAGGAGCAAGTAATGAAAGATGGGACGATGTTTACGCCTCAAATGGTTCTATAAATACTTCAGATAAAAATCAAAAGAATACAATAGTTGAATCTGATTTAGGTTTATCTTTTGTAAATAAATTAAAACCTGTATCTTATAAATTCAATAATAAAACTAGAACTCACTATGGTCTGATTGCTCAGGATGTAGAAACAACATTATCTGATATAAGTAAACCTACAAGTGGTTTTGCTGGTTTTATTAAAGAAGACATCCCAGATCAATTATATGTAGAAGATGATGATATTCCAGAAGGTAAAAAAGTAGGCGATGTTAAGACTGCTGCTTTTACAACTTATGGTCTTAGATATCACGAATTTATATCACCACTAATTAAAGCAGTACAAGAACTTTCTACAGAGGTCGAAACATTGAAAACTAAAGTTGCAGCATTGGAGGCAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3b65b6bd5fa5fb981ebc16c7e2010e6f082a8d38ce288ee734b0646a41175a01
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5777
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-SSP2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank