Protein

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Genbank accession
XYH49478.1 [GenBank]
Protein name
putative leucine-rich repeat protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MKEYFVNKITAESSGDSFEPDSSGIITMPDTLVGSAGNIISVDGLLVFKRETSNPDGIEIGDLVTGIINRTNKGALEQSTKFKGVYIGGEFNSLDSYDIIKTTELIPTSNIVLTFSKVIEEVAVDLGINNIHSTTDWNNFFSERGMHFDWIVVDSGRLMLYVSEPDKIVSLDFSYMYLTDIGMSAFLNLEYFNVSNNSFVFIPYYSIYGVRELDFSNNLLPHINYLWGSFEKLKIANFSGNLLTSLSVDNAFLETFEELDISNNQLTEFDYNHYFPSTLKRLIIISNLLTSFDPAIGALPDGLEYINLGGNSIEEYNPTNPLPSGLKEFYLSDNGLTSFNPSVSLPDNLTLLDLVSNRIASFNPSLGLPNELKVLMLDDNDIDFFDPALPVNIEEIYIGNNKLSFFNPSSPLLKLKSIGINGNLISTSSWNSETSWISSLTASGFKYANLSQNTNSSIGTNTESMLQSLGWTLSQ
Physico‐chemical
properties
protein length:475 AA
molecular weight: 52684,45930 Da
isoelectric point:4,26511
aromaticity:0,11368
hydropathy:-0,03958

Domains

Domains [InterPro]
IPR032675
STR
114–320
IPR032675 IPR032675
PTHR45617
Unmapped
123–341
PTHR45617 IPR001611
SSF52058
STR
160–442
SSF52058
XYH49478.1
1 475
Architecture
STR
STR 114-468 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYH49478.1
1 475
Domain Start End Length (AA) Confidence
N-terminal 1 112 112 0,5870
Central domain 113 447 336 0,6417
C-terminal 448 475 27 0,7344
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-112
Central
113-447
C-terminal
448-475

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage MaF61
[NCBI] 		3424028 Viruses >
Host Flavobacterium sp.
[NCBI] 		239 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYH49478.1 [NCBI]
Genbank nucleotide accession
PQ858689 [NCBI]
CDS location
range 151969 -> 153396
strand -
CDS
ATGAAAGAATATTTTGTAAATAAAATCACAGCAGAATCGTCTGGAGATAGCTTCGAACCTGACTCATCTGGTATCATAACAATGCCAGATACGCTGGTTGGCTCGGCAGGGAACATCATATCTGTTGATGGTTTATTAGTATTCAAGAGAGAGACATCGAACCCAGATGGTATTGAGATAGGTGATCTTGTGACAGGTATCATAAATAGAACAAATAAAGGTGCTTTAGAACAATCCACGAAATTTAAGGGAGTATACATTGGAGGAGAATTTAATAGTTTGGATAGTTATGATATCATAAAAACCACAGAACTGATTCCCACAAGCAACATAGTTTTAACGTTTAGTAAGGTCATTGAAGAGGTGGCTGTTGACTTGGGTATAAACAATATTCACAGTACGACCGATTGGAACAACTTCTTTTCAGAAAGAGGCATGCATTTTGATTGGATAGTTGTAGATAGCGGTAGGCTAATGTTATATGTTTCCGAGCCAGATAAAATAGTCTCTTTGGATTTCAGTTACATGTATCTCACTGATATTGGTATGAGTGCATTCTTAAATCTCGAGTATTTCAATGTATCAAATAATTCATTTGTGTTTATTCCGTATTATAGCATATATGGAGTTAGGGAGCTGGATTTCAGCAATAATTTGTTGCCACACATAAATTATCTTTGGGGTTCTTTCGAGAAGCTTAAAATAGCTAATTTCTCTGGTAATTTATTGACCAGCTTAAGCGTTGACAATGCATTTCTTGAAACATTCGAGGAATTAGATATCAGCAACAATCAATTAACAGAGTTTGATTACAATCATTATTTTCCATCAACTTTAAAAAGGTTGATTATAATATCAAATCTGCTGACATCTTTTGACCCTGCCATTGGGGCATTACCAGATGGGTTAGAATATATAAACCTAGGCGGTAACTCCATAGAAGAATATAACCCAACAAATCCATTGCCGTCGGGTCTCAAAGAATTTTATTTATCTGACAATGGATTAACATCGTTCAACCCATCAGTATCTCTACCAGATAATCTAACTCTACTGGATTTAGTATCAAATAGAATAGCATCGTTCAATCCATCATTGGGGCTACCTAATGAATTGAAAGTATTGATGCTTGACGATAATGATATAGACTTTTTCGACCCAGCCCTACCAGTGAATATAGAAGAGATATACATAGGTAACAATAAATTATCGTTTTTTAACCCTAGTTCACCGTTGTTGAAGCTGAAATCCATAGGGATTAATGGTAATCTTATATCAACCAGTAGTTGGAACAGCGAAACATCATGGATTTCGAGTCTGACCGCATCTGGATTTAAATATGCGAATTTGTCACAAAACACGAATAGCTCAATCGGAACTAATACAGAATCAATGCTTCAATCATTAGGTTGGACACTAAGTCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1584cebcc2573bc6de84b351232340c43f7365c149bf33864309af5f009f80ea
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7573
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50