Protein

View in Explore
Genbank accession
AUR89824.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSCSDFPTIQTAKTFKLDAETVNEVVTSSDDRTQPASDGLTKKTLAGIETDAINQLADIQQRADEQYSDINNQYVLRNKGDYATDPLLEFYYEFTDFNGSIYFPIVAPHQVDSATYPDPSSDPNLRLGQATDDSLVTSTGSTTPRRLDDRFADVVNIRDFGALGDGVTDDTPAISQAITLANALGKSVYYGGGDFLLSSALTSGYNFVIKTSQIGDGARLLYHPADASVAINLFQTPEDEPITGIEVSGFEVEGFGGVFFNGLYLYQSLITNNELHNSTIAFITDEDGVTPQRECVHNTISNNTILLANYREHPSYQPNPTDEQIREWGGRSFGIRFASLPLEQMHVRDEHGCSHNTISNNYIEYAAYSGFELAGPKCNHNVIQGNTFNECSGTGLEFDKGASYNTCDSNSFNNIRATEFFGGVAQGFIQLQRASTNVPIGNNITNCTFYDSHGESGVELIKIQGAALTSISNCNVAVDSPVENAGFSFLVGTVADVGALAGSLTVNMINCTGGRLSILSDSAGGIYWDHIRIDKCKLGGIVGQGATTTDQCAGNLSIINSEISHATNELDLSRSVVDTLLMDSVSVDLTTEMKLGNVSSTASKSKRVIITNCDIKCERLNVSALDSIRITNNELHDFNAYSVASIGQAKSVIIDGNTFRDCAITRFLSFSIASLPQGRAVITNNYNVNLDSTINTNDGTYDAYSYNNLWDAYVQP
Physico‐chemical
properties
protein length:716 AA
molecular weight: 77517,56280 Da
isoelectric point:4,47501
aromaticity:0,08659
hydropathy:-0,23087

Domains

Domains [InterPro]
DC_0489
STR
1–486
DC_0489 DC_0453
IPR011050
STR
152–644
IPR011050 IPR006626
IPR012334
STR
155–489
IPR012334 IPR006626
IPR024535
ENZ
155–415
IPR024535 IPR006626
IPR006626
Unmapped
242–267
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
AUR89824.1
1 716
Architecture
STR
RBD
STR 1-644 | RBD 645-703 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR89824.1
1 716
Domain Start End Length (AA) Confidence
N-terminal 1 171 171 0,9902
Central domain 172 705 535 0,9869
C-terminal 706 716 10 0,4233
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-171
Central
172-705
C-terminal
706-716

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.133.O._10N.222.51.E4
[NCBI] 		1881202 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR89824.1 [NCBI]
Genbank nucleotide accession
MG592504.1 [NCBI]
CDS location
range 17951 -> 20101
strand +
CDS
ATGAGTTGTTCAGATTTCCCAACCATACAGACGGCAAAGACTTTCAAGCTCGATGCTGAAACAGTAAATGAGGTCGTTACTTCTAGTGATGATCGCACACAACCAGCCAGTGACGGATTAACCAAAAAGACGCTTGCAGGTATCGAGACAGACGCAATAAATCAGCTTGCAGATATTCAGCAGCGAGCGGATGAGCAGTATTCAGATATCAACAATCAGTATGTTTTACGCAACAAAGGCGATTACGCAACAGACCCATTACTAGAATTTTACTATGAGTTTACTGATTTCAATGGGTCGATTTACTTCCCTATCGTTGCACCACATCAAGTTGATAGCGCTACATATCCAGACCCATCAAGCGATCCAAATTTAAGGTTAGGACAGGCGACAGATGATAGCCTTGTTACATCAACAGGAAGCACAACACCAAGGCGACTGGATGATCGCTTTGCTGATGTTGTTAATATTAGGGATTTTGGCGCACTTGGTGATGGGGTTACAGACGATACGCCAGCAATAAGCCAAGCGATAACGCTTGCTAACGCGTTAGGTAAGAGCGTGTATTATGGTGGCGGTGATTTCCTTTTATCTTCTGCCTTAACCAGTGGGTACAACTTCGTGATAAAGACGTCGCAAATTGGTGATGGGGCGAGGTTGTTATATCATCCAGCGGATGCGTCTGTTGCTATAAATTTATTTCAGACCCCCGAAGATGAACCGATCACTGGGATTGAGGTTTCTGGATTTGAAGTTGAAGGGTTTGGTGGTGTGTTCTTTAATGGGCTCTACTTATATCAAAGCCTAATAACCAACAATGAGTTACATAACTCAACAATAGCATTTATAACTGACGAGGATGGTGTAACTCCGCAACGAGAATGTGTACATAACACGATAAGCAATAATACAATATTATTGGCGAATTACAGAGAGCACCCAAGCTACCAGCCCAATCCAACCGATGAACAGATACGTGAGTGGGGAGGCAGGAGTTTTGGTATTCGATTTGCTAGCCTGCCACTTGAACAGATGCACGTTAGGGATGAGCATGGGTGCTCACACAACACCATATCAAATAATTATATAGAGTATGCCGCTTACTCAGGTTTTGAGTTAGCAGGACCAAAGTGCAACCACAACGTAATACAGGGCAACACATTTAACGAATGCTCAGGAACAGGGTTGGAGTTTGACAAGGGCGCATCTTACAACACTTGCGATTCAAATTCATTTAATAATATTAGAGCGACAGAATTTTTTGGTGGCGTAGCACAGGGATTCATCCAGTTGCAAAGGGCGTCAACAAATGTACCAATCGGGAATAACATCACAAATTGCACATTCTATGACTCACATGGTGAATCTGGTGTTGAACTTATAAAAATACAAGGGGCAGCGTTAACTAGCATTAGCAACTGCAATGTTGCGGTTGATTCACCAGTTGAAAATGCTGGGTTTAGTTTTTTGGTTGGCACTGTTGCTGATGTTGGCGCTCTCGCTGGAAGTCTGACTGTCAACATGATCAATTGCACTGGTGGCAGGTTGTCAATACTAAGTGATAGTGCTGGCGGAATTTATTGGGATCATATAAGAATCGATAAGTGCAAGCTCGGTGGCATAGTAGGGCAAGGGGCGACCACGACAGATCAGTGCGCTGGCAATCTAAGTATTATTAATAGCGAAATAAGCCACGCAACTAACGAATTGGATTTGAGTAGGTCTGTTGTTGATACTTTACTTATGGACAGTGTGAGCGTAGACCTCACAACTGAGATGAAGCTTGGCAATGTAAGCTCTACAGCTAGTAAATCAAAGCGAGTCATAATAACCAACTGCGATATAAAGTGTGAAAGGTTGAATGTGTCAGCCTTGGATTCAATAAGAATTACAAATAACGAGCTTCATGATTTTAATGCCTACTCAGTAGCAAGTATCGGTCAAGCAAAGAGCGTTATCATTGATGGAAACACATTCAGAGACTGTGCTATCACTAGATTTTTATCCTTTTCTATAGCATCACTACCACAAGGAAGGGCGGTAATTACAAATAACTACAATGTAAATCTAGACAGCACAATTAACACAAATGACGGAACTTATGATGCGTATTCATATAATAACCTGTGGGATGCTTATGTTCAGCCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8247f2a7664628ea8d630496d41674a60a2482ef3b8197a9d012adf333d56095
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7839
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank