Protein

View in Explore
Genbank accession
QBX25589.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAYDFNSLTKQADEAINRDKFYTDFEDVDPNKLHQISVLTDWMRTKAKGSDVREIIAQLFERTWLENIKEGNANMEVSLARGSYPNLKSRLDNVDNKQQKTTEQLAQKVNKDDVTSVMTPKGTLAYASLPTSGNEVGWYYYCPDGDGAHGAGNYVWNGSSWFFGGTGDEGYAKLKNELNDKLGIDTVLLKSLRADYNEDVPMDDLANDFVYTLGDLSQVPKGTTKINLDIYSGGGHGEIFLYRPDAIYQRLLVYRKRYNFTSGVNKVEIALTDKDFGNADYLKIAIFAETTGAFKTQSGFLYKYTNGDPFTFYMEYAKIDTTPSGYVDAPTYWEGNVNTNKSYPCIDVYFTRPVEKRKKSVITVSQDGTKDFTTIMEAVRNAGDCDNNPVTILIYEGVYDEVVYLRSKHNISLKGVNRDKCIIKNTTGQYYASPVMVNGDFTIENLTLRMEENGFYPEYTDNTFATYPGYALHIDGNSKDVSKETTGRIRNCTCYSEAFPAVGTGVNQNQTIIFENCEFVRNCTKDYFKRDNWRGAFVGHSSNYPTAPNQNLIIKDCIFKSNYGHAGNIRGELGDSSAFTLTAINNTFYSDEMGKDCFEYTVGQSHLHPMSNGNTATNLNNTI
Physico‐chemical
properties
protein length:623 AA
molecular weight: 70113,14170 Da
isoelectric point:5,18567
aromaticity:0,12199
hydropathy:-0,56806

Domains

Domains [InterPro]
DC_0719
STR
9–566
DC_0719
IPR012334
STR
356–568
IPR012334
IPR011050
STR
361–592
IPR011050
IPR000070
ENZ
362–427
IPR000070
QBX25589.1
1 623
Architecture
STR
STR 9-592 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX25589.1
1 623
Domain Start End Length (AA) Confidence
N-terminal 1 179 179 0,9918
Central domain 180 612 434 0,9283
C-terminal 613 623 10 0,2059
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-179
Central
180-612
C-terminal
613-623

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan264
[NCBI] 		2548081 No lineage information
Host Streptococcus infantarius
[NCBI] 		102684 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX25589.1 [NCBI]
Genbank nucleotide accession
MK448890.1 [NCBI]
CDS location
range 28139 -> 30010
strand +
CDS
GTGGCGTATGATTTTAATAGCTTAACAAAACAGGCAGATGAAGCAATCAACCGTGATAAATTTTACACTGATTTTGAAGATGTTGACCCAAATAAACTTCACCAAATTTCAGTCTTGACAGACTGGATGCGAACCAAAGCGAAGGGGTCCGATGTTCGTGAGATAATTGCTCAGCTATTCGAACGGACGTGGTTAGAAAACATCAAAGAAGGCAATGCCAACATGGAAGTATCGCTGGCAAGGGGAAGTTATCCTAATTTAAAGAGCAGATTAGATAACGTTGACAATAAGCAACAGAAAACTACCGAGCAGTTGGCACAAAAAGTGAATAAGGATGATGTAACTAGTGTTATGACACCGAAGGGAACACTAGCATACGCATCACTACCAACAAGTGGGAATGAAGTCGGATGGTATTACTATTGCCCTGACGGTGACGGAGCGCACGGAGCAGGTAATTATGTTTGGAATGGTTCGTCATGGTTTTTTGGGGGAACTGGCGACGAAGGATATGCTAAACTAAAGAATGAGCTAAATGACAAATTAGGTATCGACACTGTATTGTTAAAATCATTAAGAGCTGACTATAACGAAGATGTACCTATGGATGATTTAGCGAATGATTTTGTTTATACATTAGGAGATTTATCTCAAGTTCCAAAAGGCACTACTAAAATAAACTTGGACATATACTCTGGTGGTGGTCACGGAGAAATATTTTTGTATAGGCCTGACGCAATTTATCAGAGACTTCTTGTTTACAGAAAACGCTATAATTTTACCAGCGGGGTGAACAAAGTAGAAATTGCGTTAACTGATAAGGATTTTGGAAACGCTGATTATTTAAAGATAGCAATATTTGCTGAAACTACTGGAGCTTTTAAGACGCAATCGGGATTCTTGTACAAGTACACTAATGGTGACCCGTTTACTTTTTACATGGAATACGCAAAAATAGATACAACACCCAGTGGGTATGTTGATGCACCGACTTACTGGGAAGGTAATGTAAATACGAATAAATCGTATCCTTGCATTGATGTATATTTTACCCGTCCCGTCGAAAAGAGAAAGAAAAGTGTTATCACCGTAAGCCAAGACGGAACAAAGGATTTTACAACTATAATGGAAGCGGTAAGGAACGCTGGAGATTGCGACAACAACCCCGTAACTATTTTAATTTATGAAGGTGTATATGATGAAGTTGTGTATCTGAGAAGCAAGCATAATATCTCGCTGAAAGGTGTTAACAGAGATAAATGCATAATCAAAAACACAACAGGTCAGTATTATGCAAGCCCTGTCATGGTAAATGGAGATTTCACTATTGAAAATCTAACGCTTAGAATGGAAGAAAACGGCTTCTATCCAGAATACACCGATAACACATTTGCAACATATCCTGGATATGCTTTGCATATAGACGGTAATTCTAAAGATGTTTCAAAAGAAACTACGGGGAGAATAAGAAATTGCACTTGTTATAGCGAAGCGTTTCCCGCTGTAGGAACGGGCGTTAATCAAAATCAAACAATAATTTTTGAAAATTGTGAGTTTGTGAGAAATTGCACAAAAGATTATTTTAAACGCGACAATTGGAGAGGGGCTTTTGTTGGACATTCCTCAAATTATCCTACCGCCCCAAATCAAAATTTAATAATCAAGGATTGTATTTTTAAATCAAACTATGGACACGCTGGAAATATCAGAGGAGAATTAGGAGATAGTTCAGCATTCACGCTTACAGCTATTAATAACACATTTTATTCGGACGAAATGGGTAAAGATTGTTTTGAATATACAGTTGGTCAATCACATCTACATCCTATGTCAAATGGTAACACCGCTACAAACTTAAATAATACTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
255ff4deff6ad243580baa9779bc7a8723fa8277aff5060c8f50427b5e383914
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6346
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank