Protein

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Genbank accession
WGL30917.1 [GenBank]
Protein name
major capsid protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGVFSRSQGPANDVKRNGFDGSFQNHFTFNFGQLVPCFCKEVGPGDTFEINSAMGLNFMPTVFPVQSKINATCHFFYVRGKNLWKDYYDWYFGTKQGLVPPTISPKSFRNKALTGSIYDYMGLPTTISSGSYGDLIKINPVDGWGVYDSSTKLTSFYPLSIAGSSPYQYYQWITTDDIAEVSSNASVRDFYSSTNGFDVYSYTASNTGVESEGQCNLISSGLFVAKNSPTDELRKALFCGDGSVIYYGFRFGSNYKFVTEDFDNQRVFHLRGKIAPGFSFAVSKKIVITVASSVASGEPVLASVEAQNVVFDYKNLTFDCDFNFRPSQKPFLGGKYFNLFAYIALDFSDRTVIQTSNLNNLIVRSSSPATDFVLTLPSTAVLGTSRDIGFEDANVFSSGAVTINALPFRAYESIYNAFYRDARNNPFTINGKVEYNKFITSDEGGIDNFNYEIRYRNWENDFLTTAQPTPQFGIAPLVGITSSGTMSFSASEDGKTYNVQANVGSDGTTIDSVSYSENLPSSVRRSLVDVVSSGISINDFRNVNAFQRFLETSMRRGLKAFDQIKAHFNVDVDEKLLDMPEFIGGFNTVVSAQKVDSTVETPGSPLGSYAGQLSALSGQKHGIKCFCDQPGYIIGIVCCHPVPLYSQLLPKMFLKVNSLDNYMPEFGQIGMQPILMREVAPVQAWKDDPETLTNVFGYQRAWYDLLSNVDEVHGLFRTQLRNFVLNRVFDSAPKLGPDFTIIDPKHLNDIFSVTVDNDEEVNHKILAKVVFDLKMIRPIPKFGIPKLEPNV
Physico‐chemical
properties
protein length:791 AA
molecular weight: 87935,94330 Da
isoelectric point:5,41121
aromaticity:0,13274
hydropathy:-0,17459

Domains

Domains [InterPro]
IPR003514
STR
9–129
IPR003514 IPR037002
IPR037002
ATT
10–142
IPR037002 IPR016184
IPR016184
Unmapped
10–125
IPR016184 IPR003514
WGL30917.1
1 791
Architecture
ATT
ATT
ATT 9-142 | ATT 352-785 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WGL30917.1
1 791
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9132
Central domain 142 385 245 0,7632
C-terminal 386 791 405 0,3561
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-385
C-terminal
386-791

Taxonomy

  Name Taxonomy ID Lineage
Phage Dipodfec virus UOA04_Rod_524
[NCBI] 		3038703 Viruses > Monodnaviria > Sangervirae > Phixviricota > Malgrandaviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WGL30917.1 [NCBI]
Genbank nucleotide accession
OQ686873 [NCBI]
CDS location
range 1 -> 2376
strand +
CDS
ATGGGTGTTTTTTCACGTTCCCAAGGTCCTGCGAATGATGTCAAGCGCAATGGTTTTGACGGTTCATTCCAAAATCATTTTACATTTAACTTCGGTCAGCTCGTTCCTTGCTTCTGTAAGGAAGTCGGTCCCGGAGATACTTTTGAAATTAATTCCGCTATGGGGTTAAATTTTATGCCTACTGTTTTCCCCGTTCAATCCAAGATTAATGCTACTTGTCATTTTTTTTATGTCCGAGGTAAAAATCTTTGGAAAGATTACTATGACTGGTATTTTGGTACTAAACAAGGTCTTGTGCCTCCTACTATTTCGCCTAAATCTTTTCGTAATAAGGCTTTGACTGGTTCTATATATGATTATATGGGCTTGCCTACTACTATTTCTTCGGGTTCTTATGGTGATTTAATCAAAATTAATCCGGTTGACGGTTGGGGTGTTTATGATTCTTCTACTAAGTTAACGTCTTTTTATCCTCTTTCTATAGCTGGGTCTTCTCCTTATCAGTATTATCAATGGATTACTACTGATGATATTGCTGAAGTTTCATCTAATGCTTCCGTGCGTGATTTCTATTCAAGCACTAATGGTTTTGATGTGTATTCTTATACTGCTTCGAATACTGGTGTTGAGTCTGAAGGTCAGTGTAATTTAATTAGCAGTGGTCTTTTTGTTGCAAAAAATTCTCCTACTGATGAACTTCGTAAGGCTTTATTTTGTGGTGATGGCTCGGTGATTTATTACGGTTTTCGTTTTGGTAGCAATTATAAATTTGTTACCGAGGATTTTGATAATCAACGTGTTTTTCATTTACGGGGTAAAATTGCTCCCGGCTTTTCTTTCGCTGTTTCTAAAAAGATTGTTATTACTGTTGCTTCTTCGGTTGCGTCCGGTGAGCCGGTTCTTGCTTCAGTTGAGGCTCAAAATGTTGTTTTTGATTATAAAAATTTAACTTTTGACTGTGATTTTAATTTCCGTCCTTCTCAAAAGCCATTTTTAGGCGGTAAGTATTTTAATCTTTTTGCTTATATAGCTTTAGATTTTTCAGATAGGACTGTTATTCAAACTTCCAATTTGAATAATTTGATTGTTCGTAGTTCATCTCCTGCTACTGATTTTGTGTTGACTCTTCCTAGTACTGCTGTTCTTGGAACTTCCCGTGATATAGGTTTCGAGGATGCTAATGTGTTCTCTTCTGGTGCTGTTACAATCAATGCTCTTCCTTTCCGTGCTTATGAGTCCATTTACAATGCTTTCTATCGTGATGCCCGTAATAACCCATTTACTATTAATGGTAAAGTTGAGTATAATAAGTTTATAACTTCTGATGAAGGTGGTATAGATAATTTTAATTATGAGATACGTTATAGGAATTGGGAGAATGATTTTCTTACGACTGCACAGCCTACTCCACAATTTGGTATCGCTCCTCTTGTCGGTATTACGTCTTCCGGTACAATGTCTTTCTCTGCATCCGAAGATGGTAAAACGTATAATGTTCAGGCTAATGTTGGTTCAGATGGTACGACAATCGATAGCGTATCTTATTCGGAAAATCTTCCCTCCTCTGTTAGACGTTCTTTGGTCGATGTTGTCAGTAGTGGTATATCTATCAATGACTTTCGTAATGTTAATGCTTTTCAACGTTTTTTAGAGACTTCCATGCGTCGCGGTCTTAAAGCTTTCGACCAGATAAAGGCTCATTTTAATGTTGATGTTGATGAGAAGTTACTTGATATGCCTGAATTTATTGGCGGTTTCAATACTGTTGTCTCTGCACAAAAAGTTGATAGTACTGTTGAAACTCCCGGTTCTCCTCTTGGCTCCTATGCCGGTCAGTTGTCTGCCCTTTCCGGTCAGAAACATGGTATCAAGTGTTTTTGTGACCAACCCGGTTATATCATCGGAATTGTGTGCTGTCATCCCGTTCCTCTTTATTCGCAGCTGCTTCCTAAAATGTTTTTAAAAGTTAATTCTTTGGATAATTATATGCCTGAATTTGGTCAAATAGGCATGCAGCCCATCCTGATGAGAGAGGTCGCACCCGTTCAGGCTTGGAAAGATGACCCTGAAACGTTAACAAATGTTTTTGGCTATCAACGTGCTTGGTATGATTTGTTGAGTAATGTCGACGAAGTTCACGGCTTGTTCCGTACCCAGCTGCGTAATTTTGTTCTTAACCGTGTCTTTGATTCCGCTCCAAAACTCGGCCCTGATTTTACGATTATAGACCCTAAGCATCTTAATGATATATTTTCAGTCACTGTTGATAATGATGAAGAGGTAAATCATAAGATACTTGCTAAAGTTGTATTTGACTTAAAAATGATACGTCCTATACCTAAGTTTGGTATTCCTAAACTTGAACCTAATGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c36c3f2d1c954edbdd282d1890161b177dd9ed7139a7fbc6ceb0b0e80aee4ad6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3012
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Towards deciphering the DNA virus diversity associated with rodent species in the families Cricetidae and Heteromyidae Lund,M., Larsen,B.B., Gryseels,S., Kraberger,S., Rowsey,D.M., Steger,L., Yule,K.M., Upham,N.S., Worobey,M., Van Doorslaer,K. and Varsani,A. — — GenBank