Protein

Genbank accession

API82954.1 [GenBank]

Protein name

Phage tail fiber repeat protein

RBP type

Evidence RBPdetect

Probability 0,91

Evidence RBPdetect2

Probability 0,96

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Protein sequence

MSTKFKTVITTAGAAKLAAATAPGGRKVNITTMAVGDGGGKLPVPDAGQTGLIHEVWRHALNKISQDKRNSNYIIAELVIPPEVGGFWMRELGLYDDAGTLIAVANMAESYKPALAEGSGRSQTCRMVIIVSSVASVELTIDTTTVMATQDYVDDKIAEHEQSRRHPDASLTAKGFTQLSSATNSTSETLAATPKAVKTAYDLANGKYTAQDATTARKGLVQLSSAINSDSKTLAATPKAVKTAYDLANGKYTAQDATTARKGLVQLSNDTNSDSETFAATPKAVKAANDNANRRVPDGRKVNGKPLTNDVNVTSQDIFNSQSIAIGANQNLDNYKTPGLYHQPLNANTSASLKYPENLAGTLVVLKNAGITQIYYVYNTSRSYTRSQYSTGGWTSWTPQDSFPVGAPIPWPSDSVPTGYALMLGQTFDKAVYPLLAAAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTKTTSSFDYGTKTVSTFNHGTKTTNNTGAHTHTVGGRYGGDSIGGKQRVQVSGTNQVSSSAGAHAHTVDIGQHNHTVGIGAHSHSIAIGAHSHTVTVSATGNSENTVKNVAYNYIVRLA

Physico‐chemical properties

protein length:	605 AA
molecular weight:	63701,04990 Da
isoelectric point:	9,22609
aromaticity:	0,06281
hydropathy:	-0,37289

Domains

Domains [InterPro]

IPR022225
1–151

IPR022225 IPR005068 IPR005068 IPR005068 cd19958 IPR037053 IPR005003 IPR005003 IPR005003 IPR005003

IPR051934
328–605

IPR051934

SSF88874
396–604

SSF88874

IPR011083
406–453

IPR011083

API82954.1

1 605

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Domains [InterPro]

InterPro ID	Start	End	Source	Name
IPR022225	1	151	InterPro	Phage tail fibre protein, N-terminal domain
IPR005068	170	211	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-2
IPR005068	214	255	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-2
IPR005068	258	297	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-2
cd19958	323	401	CDD	None
IPR051934	328	605	InterPro	Bacteriophage Tail Fiber Structural Protein
SSF88874	396	604	SUPERFAMILY	None
IPR037053	401	454	InterPro	Phage tail collar domain superfamily
IPR011083	406	453	InterPro	Phage tail collar domain
IPR005003	469	482	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1
IPR005003	511	522	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1
IPR005003	545	554	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1
IPR005003	564	574	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage STYP1 [NCBI]	2939039	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	No host information

Coding sequence (CDS)

Genbank protein accession

API82954.1 [NCBI]

Genbank nucleotide accession

KX833211.1 [NCBI]

CDS location

range 19682 -> 21499
strand +

CDS

ATGAGCACAAAATTTAAAACCGTTATCACTACTGCCGGAGCCGCAAAGCTGGCAGCGGCAACCGCACCGGGAGGGCGGAAGGTCAACATTACCACGATGGCCGTCGGGGATGGCGGTGGTAAATTGCCTGTCCCGGATGCCGGACAGACCGGGCTTATCCACGAAGTCTGGCGACATGCGCTGAACAAAATCAGTCAGGACAAACGAAACAGTAATTATATTATCGCAGAGCTGGTTATTCCGCCGGAGGTGGGCGGTTTCTGGATGCGTGAGCTTGGCCTGTACGATGATGCGGGAACGTTAATTGCCGTGGCGAACATGGCCGAAAGTTATAAACCTGCCCTTGCCGAAGGCTCAGGGCGTTCGCAGACCTGCCGCATGGTCATCATCGTCAGCAGTGTGGCCTCAGTGGAGCTGACCATTGACACCACAACGGTGATGGCGACGCAGGATTACGTTGATGACAAAATTGCAGAGCATGAACAGTCACGACGTCACCCGGACGCCTCGCTGACCGCAAAAGGTTTTACTCAGTTAAGCAGTGCGACCAACAGCACGTCTGAAACACTGGCCGCAACGCCGAAAGCAGTAAAGACCGCCTATGACCTTGCTAACGGGAAATATACTGCGCAGGATGCCACCACAGCGCGAAAAGGCCTTGTTCAACTCAGTAGCGCCATCAACAGCGATTCTAAAACGCTTGCGGCAACGCCAAAGGCGGTTAAGACAGCGTATGACCTTGCTAACGGGAAATACACTGCGCAGGACGCTACTACAGCGCGAAAAGGGCTTGTTCAGCTCAGTAATGACACCAACAGCGATTCTGAAACATTTGCCGCGACTCCGAAAGCGGTGAAAGCTGCCAATGATAATGCAAACAGACGCGTTCCTGACGGGCGTAAGGTCAATGGCAAACCACTGACCAATGATGTCAATGTTACATCGCAGGATATTTTTAACAGTCAGAGTATTGCGATTGGCGCAAACCAGAATCTGGATAATTACAAAACGCCGGGACTGTACCATCAGCCACTGAATGCGAATACAAGCGCATCGCTGAAATACCCGGAGAATCTTGCAGGTACTCTGGTTGTGCTTAAAAATGCCGGAATAACACAAATTTACTATGTCTATAACACATCAAGAAGCTATACCCGCAGCCAGTATTCAACGGGGGGCTGGACATCATGGACACCGCAGGATTCATTTCCGGTAGGTGCTCCAATCCCGTGGCCTTCTGATTCAGTACCTACAGGCTATGCCCTGATGCTGGGGCAGACTTTTGATAAAGCAGTCTATCCCCTGCTTGCAGCAGCTTATCCGTCAGGGGTGATTCCAGATATGCGCGGCTGGACAATCAAGGGCAAACCCGCCAGTGGTCGCGCCGTATTATCACAGGAACAGGACGGAATTAAATCACATACCCACAGTGCCAGTGCATCCAGTACGGATTTAGGGACGAAAACAACCAGTTCGTTTGATTACGGGACAAAAACGGTCAGCACGTTTAACCACGGCACAAAAACGACAAACAATACGGGAGCGCATACACACACTGTCGGTGGTCGTTACGGTGGTGACTCCATCGGGGGTAAACAACGCGTACAGGTATCAGGAACCAACCAGGTGTCAAGCTCTGCGGGAGCACACGCCCATACAGTCGACATTGGTCAGCATAATCACACGGTTGGCATTGGTGCTCACAGCCATTCCATTGCGATTGGCGCGCATAGTCATACCGTCACTGTAAGTGCCACAGGTAATTCAGAGAACACCGTAAAAAACGTTGCGTATAACTATATTGTGAGGCTGGCATAA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID

aac2d025b5f30ccbc4fb5f29fa26d4462d4302748881ec83708e428f9ba33358

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,8198

Evidence 0,8198

Download PDB

Literature

Title	Authors	Date	PMID	Source
Whole genome sequence analysis of Salmonella Typhi isolated in Thailand before and after the introduction of a national immunization program	Dyson,Z.A., Thanh,D.P., Bodhidatta,L., Mason,C.J., Rabaa,M.A., Vinh,P.V., Thanh,T.H., Thwaites,G.E., Baker,S. and Holt,K.E.	2017	28060810	GenBank