Protein

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Genbank accession
YP_001210239.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,78
Protein sequence
MATITYRGAGAWGAGKGSKLTNAEVDNNFYSLNQTKVGNDSVQRLTNGFKFSGGILNDSGTTGVSIGLDNSNSTAKIDTISAGATDSKHWRTRYDGTTVTFQYINDAWNASADWLSNTRSGMTCTAIWMGVRPTWRVSGTDRTPWDNGNLDESQLVRMDRGNTLRSAGAMAVTGGYVQNAPGTYTSIGVEGGVGGANAGILMSAGSRAADNRYWNMQISGNDLVFRTVNDAWSAENVWMRVTRSGLTISRLEYGLRPYFAGNLAWDAGNFNPGDYLNRNGGQVNGWVTINAAGATSLINIVADANQEKRIQFGNNNSGPNRWAVAVSGDNNAGDLYINRSDDAGNYVESPIVVRRSNGRVDIGNGGLQVWGNCAMMGGAVDRYFTIDTSANRYRAFTINTSGKPRWQWGVSGEVEGGGNNGSNFYISRWADDGTGLDTTFTINRASGQAGFNRNLVVRGNPDGAAAANLTLDSAKGQYKSIKFNAAGLQRWEIGCDAANESGNNNGTDWFLSRYNDAGAFIDVPFRIYRASGNVQIRGRTDGVAIPTGSIGEVLTFNSIPTGVPIGGSSGTVVLGVTIPAGVWLCTLRSILKNGGGAVSLISHAWQPPGYVGQDGYGAATRPKDGNWTTLTNTVVVRSSASILSQVSWYLAGDAGSADGTVDVTCVRIA
Physico‐chemical
properties
protein length:669 AA
molecular weight: 70952,37490 Da
isoelectric point:8,45008
aromaticity:0,09268
hydropathy:-0,32227

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_001210239.1
1 669
Domain Start End Length (AA) Confidence
N-terminal 1 75 75 0,4036
Central domain 76 274 200 0,4554
C-terminal 275 669 394 0,8528
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-75
Central
76-274
C-terminal
275-669

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage BcepGomr
[NCBI] 		437329 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Burkholderia cepacia
[NCBI] 		292 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001210239.1 [NCBI]
Genbank nucleotide accession
NC_009447.1 [NCBI]
CDS location
range 15378 -> 17387
strand +
CDS
ATGGCGACGATTACCTACCGGGGTGCCGGGGCTTGGGGCGCTGGCAAAGGCTCCAAGCTCACCAACGCGGAAGTTGACAATAACTTCTATTCCCTCAATCAGACCAAAGTCGGGAACGATTCCGTTCAGCGGCTTACCAATGGCTTTAAGTTCAGCGGTGGCATTCTGAATGATTCTGGAACCACTGGCGTATCCATTGGGCTCGATAATTCGAACTCGACTGCCAAGATCGATACTATTTCGGCAGGGGCAACGGATTCGAAGCATTGGCGCACGCGCTATGACGGGACTACCGTTACGTTCCAGTATATCAACGACGCATGGAATGCCTCGGCAGACTGGCTTTCTAATACCCGATCGGGTATGACTTGCACTGCTATCTGGATGGGCGTTCGTCCTACTTGGCGCGTGAGCGGAACGGATCGCACGCCTTGGGACAACGGGAACCTCGATGAGAGCCAGCTTGTCCGCATGGATCGCGGCAACACGCTGCGCTCTGCCGGGGCTATGGCTGTCACTGGCGGCTATGTGCAGAATGCGCCCGGAACCTATACGTCCATCGGCGTCGAAGGCGGGGTCGGTGGCGCGAACGCGGGCATCCTGATGTCGGCAGGCTCGCGCGCCGCCGACAACCGCTACTGGAACATGCAGATCAGCGGCAATGATCTTGTGTTCCGAACGGTCAACGATGCATGGAGCGCTGAAAACGTTTGGATGCGCGTCACTCGATCCGGTCTGACTATCAGCCGCCTTGAGTACGGCCTCCGCCCGTATTTCGCTGGGAACCTTGCATGGGATGCAGGCAACTTCAACCCGGGCGACTACCTGAACCGGAATGGTGGGCAGGTCAATGGTTGGGTTACAATCAATGCAGCCGGGGCGACCTCGCTAATCAACATCGTTGCGGATGCGAATCAGGAAAAGCGGATTCAGTTCGGAAATAACAATTCCGGGCCGAATCGGTGGGCTGTCGCAGTATCAGGCGATAACAACGCAGGCGACCTCTACATCAATCGGAGCGACGATGCTGGTAACTATGTCGAGTCTCCGATTGTTGTTCGTCGCTCAAATGGCCGGGTCGATATCGGCAACGGCGGCCTTCAAGTCTGGGGCAACTGTGCGATGATGGGCGGCGCAGTCGATCGATATTTCACCATCGATACGAGCGCAAACCGATATCGCGCATTTACGATCAACACATCGGGCAAACCTCGTTGGCAATGGGGCGTGAGCGGTGAAGTTGAAGGTGGGGGGAACAACGGCTCCAACTTCTACATCAGCCGCTGGGCTGACGATGGCACAGGGCTCGATACGACTTTCACGATCAACCGCGCGTCCGGGCAAGCTGGATTCAACCGCAACCTTGTGGTCAGAGGTAACCCTGATGGTGCAGCAGCAGCAAACTTGACGCTCGATTCAGCCAAAGGCCAGTACAAGTCGATTAAGTTCAATGCAGCCGGTTTGCAGCGCTGGGAAATTGGCTGCGACGCTGCGAACGAAAGTGGGAACAACAATGGAACCGATTGGTTCCTTTCGCGATACAATGATGCCGGAGCGTTTATCGACGTTCCATTCCGCATTTATCGAGCGAGCGGTAACGTTCAGATTCGCGGTCGGACTGATGGGGTCGCGATCCCGACAGGATCTATTGGCGAAGTGTTGACGTTTAACAGCATCCCTACCGGAGTGCCGATTGGCGGATCGAGCGGCACCGTAGTGCTCGGCGTGACTATCCCGGCCGGGGTTTGGCTTTGCACGCTTCGGTCGATTTTAAAGAATGGCGGCGGCGCTGTTAGTTTGATTAGTCATGCTTGGCAACCTCCGGGATATGTCGGACAAGATGGATACGGCGCAGCGACCCGCCCAAAGGATGGGAACTGGACGACTTTGACCAACACCGTGGTGGTTCGCAGCAGCGCATCGATCCTTTCCCAAGTTTCCTGGTACCTTGCTGGGGATGCTGGGTCTGCCGATGGAACGGTTGATGTGACGTGCGTGCGTATCGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4aa65589193330d55a2dfdd8e2b04f6a9e439bdd027221c238440ccf2177e8c9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7002
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genomic sequence of BcepGomr, a phage from North Carolina soils Summer,E.J., Das,A., Robinson,S., Camarena,A., Connolly,F., Palmieri,K., Gonzalez,C. and Young,R. 2011-09 — GenBank