Protein

View in Explore
Genbank accession
YP_009822853.1 [GenBank]
Protein name
baseplate spike
RBP type
TF
Evidence RBPdetect2
Probability 0,55
Protein sequence
MQTYACQTGDVFISLPIKVGDLVWVMVSERDVANLMASDGSKPLNSTTQRTHDLSDCFAIPAFFPDGKLKEYDTNNLVIGNQNTKIVVKSDGIEITTSEASITADNLVVNANLQVNGNTSLNGSVEATGDTFKHNNVNVGSTHTHIGVQTGSGTSGVPTP
Physico‐chemical
properties
protein length:160 AA
molecular weight: 16911,57900 Da
isoelectric point:4,80053
aromaticity:0,05000
hydropathy:-0,18938

Domains

Domains [InterPro]
IPR037026
ATT
2–61
IPR037026
IPR041599
ATT
7–61
IPR041599
DC_1459
STR
19–159
DC_1459
YP_009822853.1
1 160
Architecture
ATT
STR
ATT 2-61 | STR 62-159 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rheinheimera phage Barba8S
[NCBI] 		2849600 Uroviricota > Caudoviricetes > Barbavirus >
Host Rheinheimera sp. BAL341
[NCBI] 		1708203 Pseudomonadota > Gammaproteobacteria > Chromatiales > Chromatiaceae > Rheinheimera >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009822853.1 [NCBI]
Genbank nucleotide accession
NC_048188 [NCBI]
CDS location
range 64802 -> 65284
strand +
CDS
ATGCAAACATACGCTTGCCAAACGGGTGATGTGTTTATATCACTTCCCATCAAAGTTGGTGACTTAGTATGGGTGATGGTGAGTGAACGCGATGTAGCCAATCTAATGGCTTCTGACGGTTCTAAACCTTTAAATTCCACAACGCAACGTACACACGATTTATCAGATTGCTTCGCTATTCCAGCTTTCTTTCCAGACGGTAAATTGAAGGAATATGACACCAATAACCTAGTAATTGGTAATCAGAATACTAAAATCGTAGTGAAGTCTGATGGCATCGAAATAACCACCTCAGAAGCGTCTATAACAGCAGATAACCTAGTAGTCAATGCCAACCTACAGGTCAATGGTAACACCTCCCTAAATGGCTCTGTGGAAGCTACAGGCGATACGTTCAAACATAATAATGTTAATGTTGGTAGTACACATACCCATATAGGTGTCCAGACAGGTAGTGGAACATCAGGAGTCCCAACACCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5b25479c635190a25d422f68121125f411378feb91137a293d63a7944194f0ea
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7785
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and seasonal variations among aquatic phages infecting the Baltic Sea Gammaproteobacteria Rheinheimera sp. bal341 Nilsson,E., Li,K., Fridlund,J., Sulcius,S., Bunse,C., Karlsson,C.M.G., Lindh,M., Lundin,D., Pinhassi,J. and Holmfeldt,K. 2019-09-15 — GenBank