Protein

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Genbank accession
ASZ77945.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGVNDANKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLTTGGISYSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFSGKTLTIDCKAKFIGDGNLVFTQLGKGSIVIAPFMESATTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKGQSISSTLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGAHGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWGGFDLGADTDMNPEDDRPGDFPISQYPVHMLPLNHLIDNLFVRGSLGVGFGMDGQGLYVSNITVEDCAGSGAYILAHETVFTNIAIIDTNTKNFPANQIYISGACRVNGLRLVGIRSTTEQGMTVDAPNSTVSGLTGFVDPSRINVADLMEGGLGNSRINSFDNDSAALRFRIHKLSKTLDSGSVYSHINGGPGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVATTVLPDNAVRDNGSISLYLEGDNLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72860,65390 Da
isoelectric point:5,20852
aromaticity:0,09064
hydropathy:-0,15219

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
G3DSA:2.10.10.80
ATT
65–130
G3DSA:2.10.10.80 IPR015331
IPR040775
RBD
71–132
IPR040775 IPR012332
IPR015331
RBD
138–684
IPR015331
ASZ77945.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASZ77945.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9937
Central domain 155 591 438 0,9845
C-terminal 592 684 92 0,8769
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-591
C-terminal
592-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage ST3
[NCBI] 		2025820 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASZ77945.1 [NCBI]
Genbank nucleotide accession
MF001364.1 [NCBI]
CDS location
range 19951 -> 22005
strand -
CDS
ATGTCCAGCGGTTGCGGTGATGTATTGTCACTTAATGATTTACAAATAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGTAAACAAGGCGGTGTAGCTGGTGGTGCGGATATCGACTACGCCACTAACCAGGTAACCGGGCAGACGCAGAAGACGCTTCCCGCAGTCTTACGTGATGCTGGTTTCTCCCCGGCATCTTTTAACTTTACGACCGGGGGTACTCTCGGCGTAAACGACGCCAATAAAGCGGTTCTTTGGCCGAAAGAAGATGGTGGAGACGGTAACTACTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCCCTTACGACAGGCGGCATTTCGTATTCCGCTTGGGTCGCGTTCGGAGATATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCCGTTGATAGCGTTCTTATCGACCGCGATTACACTTTCAGTAATAACGAGACCGTTAACTTCAGCGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATCGGCGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATTGTAATAGCCCCCTTTATGGAGAGTGCTACAACGCCGTGGGTGATTAAACCGTGGACTGACGATAATCAATGGATAACCGACCCCGCGGCAATCGTGGCCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTACGCCAAGTTCCCTGGCATAGAATCCCTTCTCCCTCCGGAAGCTAAAGGGCAAAGCATATCTTCTACCCTGGAAATTCGGGAATGTACAGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGTGGATGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGCGGTGCACACGGCGTAATCACCTTCGAAAACTTAAGCGGAGATTGGGGCAAAGGTAACTATGTTATCGGCGGGCGCACAAGTTACGGTTCGGTAAGTAGCGCGCAATTCTTACGCAACAATGGCGGTTTCGCGCGCGATGGCGGGGTCATCGGGTTTACCTCGTATCGTGCAGGGGAAAGTGGTGTTAAGACGTGGCAAGGTACGGTAGGTTCTACGACATCTCGTAACTACAACCTGCAATTCCGGGATTCGGCGGTACTGTACCCTGTATGGGGCGGCTTCGATTTAGGCGCAGATACTGACATGAACCCCGAAGATGACCGCCCAGGGGATTTCCCCATTTCTCAGTACCCGGTACATATGCTCCCTTTAAACCATTTGATAGACAATCTATTTGTTAGAGGTTCGCTGGGGGTAGGATTCGGTATGGACGGGCAAGGTCTGTATGTCTCTAACATAACCGTCGAGGATTGCGCTGGTTCTGGGGCTTATATTCTTGCCCACGAAACAGTATTCACTAATATCGCAATAATCGACACCAATACTAAAAACTTCCCTGCGAACCAGATATATATCTCGGGGGCCTGTCGTGTAAACGGCCTTCGTTTGGTCGGCATCCGTTCAACTACCGAACAGGGCATGACGGTAGACGCACCTAACTCCACTGTAAGCGGACTAACGGGCTTCGTGGACCCCTCAAGGATTAACGTAGCCGATTTGATGGAGGGAGGTCTTGGTAACTCTCGCATAAACAGTTTCGATAATGATTCTGCGGCGCTTCGGTTTCGTATTCATAAACTGTCAAAAACCCTTGATAGTGGGTCCGTGTACTCCCACATTAACGGCGGGCCGGGTTCTGGCTCAGCATGGACCGAAATTACCGCTATTGCGGGGAGCTTGCCCGATGCCGTATCATTAAAAATAAATAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGACGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGAGGGCGATAACCTTAAAGCGTTAGTTAAGCGGGCCGACGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
96ab93513dabbd0e9af841e7a14d7d13a735f76beab9dff4de931d2d3d387336
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6898
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Lytic Bacteriophage ST3 Infecting Salmonella Typhimurium Isolates Kim,D., Kim,Y.J., Han,B.K. and Kim,H. 2012-01-15 — GenBank