Protein

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Genbank accession
XXJ62863.1 [GenBank]
Protein name
long tail fiber proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,63
Protein sequence
MSEFRRAFRASGLDASGQNVINVANPRADELFDGVNLGYFVDENTVQEYDATRSHYKLDFIVEYNQRLYKNIIEVTAPEPFDVNKWKKMRTDPEWEDTDTSVGSNVGDFLFLTASSAVTVTLPPSPVEGDTVTIKDGKGVLSAYPCTVAAGGGLSIQYYGYTGAIQSVTSVLFNRPNATIYFVFNGIAWTYQIDQEKYETYIDAGHSTQQGSYLTNGGYFTSPGETVTFDGSDKKIAISLPRNPNYGDTVHLKDVAYLENQTSIQIGVHPSSTGQIVQDPISGARSSTISLDTIGAADITYIDDLGTGVWLVTVANNPHLWNYVGESSTVSLKPRTRYAIEIADAVPEMFITLPEKPVDGDWIEISHNKTAHKTVTVQVHPNFGDDDPGHGVDEYKVFLDFETYRYQKYRHYVDFVPFFVESFEISDYDSGYSFVLYYDGTRKVWSFGNIATRIDIADELHRKRPGIVPLADPTEALAHGIEYAHPEDVAKPWADQSPLKDHVITVETLDARRAAEDQVGMARIASLTTDEALEESRSGALVRYPDTNFRHDIVVTPRSLNARTATETRRGVVEIATQTETRSTTNDVQVLTPKKFHAAQAEENLTGVAELTKASNNIAANGTVSSTANMRSDRSTNGLVDTVYDKTDHLRIVTPKMLDEYRATENQPGTLWVAKSTELRINDSTVDDAIITPKKLAAWKASDTIRGIARRATQTEANAISGSGESWNNVFITPETLYNRSATETRRGVAEIATQAEVDAGVLNTHIVSPLKFKTWLAYDHFTSDGVLQGAGYGVSGISHTGDIWNGINLEIALATETQRGTLEVATQAEANANTGGSDVHIITPAKLNARRATETLAGIAEIATGPEIEAGTNDVTIVTPAKLLHWTRYATNSRASESLWGTVHNATIAETFVGNDTVGSTQPYTSYLRNSYAVTPYGLHYALRNYLPLHATADNSQLLDGLDSTQFARRDIDQTINGTYTFDNHLVLAKNGGFLIVENPTNDSASVKLDWYLDEPRIRVGGGGVGSSAPFKIMGTGDVDRWQVNSTGYTTQPGGASFGNSVYENEASANVDGTYASYSSPATGSLRSKYLGINNVAKASEKWVTARTVTLTGDLTGNFTIDGSGNVSTNVQVNDNSHNHSGENITSGTIANARLIKTSRTSQGIVQVTNDVRTADPVNASDPHQALSAGAGKTLSERIDLFTPDGGTGESVKYRDYIQVGTVRMSTNNQGVLEFTFGHAI
Physico‐chemical
properties
protein length:1242 AA
molecular weight: 135281,64630 Da
isoelectric point:5,04664
aromaticity:0,08696
hydropathy:-0,37955

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXJ62863.1
1 1242
Domain Start End Length (AA) Confidence
N-terminal 1 383 383 0,8221
Central domain 384 768 386 0,0472
C-terminal 769 1242 473 0,2735
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-383
Central
384-768
C-terminal
769-1242

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage CZ01
[NCBI] 		3435809 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXJ62863.1 [NCBI]
Genbank nucleotide accession
PV740454 [NCBI]
CDS location
range 160304 -> 164032
strand -
CDS
ATGTCGGAATTCCGCAGAGCATTTCGTGCGTCAGGTCTTGATGCAAGTGGTCAAAACGTAATTAACGTAGCAAACCCACGAGCAGATGAATTGTTCGACGGAGTTAACCTTGGTTACTTTGTCGATGAAAACACAGTCCAAGAGTATGATGCTACGCGATCTCACTACAAATTAGACTTCATCGTTGAGTATAATCAGCGTTTATACAAAAACATTATCGAAGTCACTGCGCCTGAACCATTTGATGTTAATAAATGGAAGAAGATGCGTACCGACCCAGAATGGGAAGATACAGATACTTCAGTCGGTTCTAACGTAGGTGATTTCTTATTCCTTACTGCAAGCTCAGCAGTAACCGTAACTCTACCACCATCGCCAGTAGAAGGCGATACTGTTACAATCAAAGATGGTAAAGGCGTTCTTTCTGCATACCCATGTACAGTAGCAGCAGGCGGTGGGTTATCTATCCAATATTACGGATACACTGGAGCAATACAATCGGTTACATCAGTTCTATTCAATCGACCAAACGCGACAATCTACTTCGTGTTTAACGGCATTGCATGGACATATCAAATCGATCAGGAAAAATACGAAACATACATCGACGCTGGTCACTCAACACAGCAAGGTTCGTACTTGACAAATGGCGGTTACTTCACTAGTCCTGGTGAAACTGTTACATTTGACGGTTCAGACAAAAAGATAGCTATTTCTTTACCTCGTAACCCGAACTATGGTGATACTGTCCATCTAAAAGACGTTGCATATCTTGAGAATCAAACATCAATTCAGATTGGTGTTCATCCGTCGTCAACTGGTCAGATAGTTCAAGACCCAATTTCAGGTGCAAGAAGTTCAACAATAAGTCTTGATACAATTGGTGCTGCCGATATTACGTACATCGATGATCTTGGGACTGGCGTATGGTTAGTTACTGTTGCGAACAATCCTCACTTGTGGAACTACGTCGGTGAATCGAGCACGGTTTCTCTTAAACCACGTACCCGTTACGCGATTGAAATTGCAGACGCTGTTCCAGAAATGTTCATCACTCTACCTGAAAAGCCAGTAGATGGTGACTGGATTGAGATTTCACACAACAAGACAGCACATAAAACTGTAACAGTACAAGTACACCCGAATTTCGGTGACGATGATCCGGGTCATGGGGTTGATGAATACAAAGTATTCTTGGACTTTGAGACATATCGTTATCAGAAATACCGCCACTATGTTGACTTTGTACCGTTCTTTGTAGAATCGTTCGAAATTAGTGACTACGACAGTGGTTACTCGTTCGTTCTGTACTACGATGGGACACGTAAAGTGTGGTCATTCGGAAATATAGCGACTCGTATCGACATTGCAGACGAACTACATCGTAAACGTCCGGGTATTGTGCCACTAGCTGACCCAACAGAAGCACTTGCACACGGAATTGAATACGCGCACCCAGAAGACGTTGCGAAGCCATGGGCTGATCAAAGTCCTCTGAAAGATCACGTAATCACAGTTGAGACTCTTGACGCACGCCGTGCAGCAGAAGATCAAGTCGGTATGGCTCGTATCGCATCGTTAACAACAGACGAAGCACTTGAAGAATCACGTTCTGGCGCGCTTGTGCGCTATCCAGATACTAACTTCAGACATGATATTGTAGTTACACCTAGAAGCTTGAACGCACGTACAGCGACTGAAACACGTCGTGGTGTTGTTGAGATTGCGACTCAAACTGAAACACGCAGTACAACAAATGATGTTCAAGTACTGACACCTAAGAAGTTCCATGCTGCACAAGCTGAAGAGAACTTGACTGGGGTTGCTGAGCTAACAAAAGCATCAAATAACATTGCTGCTAACGGAACAGTTTCATCAACTGCAAACATGCGTTCAGACCGTTCTACAAATGGTCTAGTTGATACAGTTTACGATAAGACAGATCATCTACGTATCGTAACACCAAAGATGCTTGATGAATATCGTGCAACTGAGAATCAGCCAGGTACATTGTGGGTTGCTAAGTCAACTGAGCTTCGTATTAACGACTCAACAGTTGATGACGCGATAATCACGCCTAAGAAATTAGCAGCGTGGAAAGCAAGTGATACTATTCGTGGTATTGCTCGTCGTGCGACTCAAACTGAAGCAAATGCGATCAGTGGTTCAGGCGAATCATGGAACAACGTATTCATCACTCCTGAAACGTTGTACAATCGTTCAGCGACTGAAACACGTCGTGGTGTAGCTGAGATTGCAACTCAAGCTGAAGTTGATGCTGGTGTGCTCAACACGCACATCGTTAGCCCACTGAAATTCAAAACGTGGCTTGCGTATGATCATTTCACAAGTGACGGTGTATTGCAGGGTGCTGGTTACGGCGTATCTGGTATTTCACATACTGGTGACATCTGGAATGGCATTAATCTAGAAATCGCACTTGCGACTGAAACTCAACGCGGTACACTTGAAGTTGCGACTCAAGCTGAAGCAAATGCAAACACTGGTGGTTCTGATGTTCACATAATCACTCCGGCTAAGCTGAATGCACGTCGTGCAACTGAAACTTTAGCAGGTATTGCTGAAATTGCAACAGGACCTGAAATTGAAGCAGGGACTAATGATGTAACTATTGTTACACCAGCGAAATTGCTACACTGGACTCGATATGCAACTAACTCACGTGCAAGCGAATCCCTTTGGGGTACCGTTCATAACGCGACTATTGCAGAAACGTTCGTCGGTAACGACACAGTTGGTTCAACACAACCATATACGTCTTACTTGCGTAACTCATATGCAGTAACTCCGTATGGCTTGCATTACGCATTACGTAACTACTTGCCGTTACATGCAACTGCTGACAACTCACAATTGCTAGACGGTCTCGATAGCACTCAGTTTGCACGTCGTGACATTGATCAAACAATAAACGGTACGTACACGTTTGACAATCATCTAGTTCTTGCTAAGAACGGCGGGTTCTTGATTGTTGAAAACCCAACTAATGATTCAGCAAGCGTTAAACTTGACTGGTATTTAGACGAACCTCGCATTCGCGTTGGAGGGGGTGGTGTTGGTTCTAGTGCACCGTTTAAAATCATGGGCACGGGTGACGTAGATCGTTGGCAAGTTAACTCAACGGGTTACACAACTCAACCGGGTGGTGCGTCATTCGGAAATTCTGTATATGAGAATGAAGCAAGCGCAAACGTTGATGGTACATACGCGAGTTACAGCAGCCCAGCAACAGGAAGTCTTCGCAGCAAGTACTTGGGTATCAACAATGTAGCTAAAGCATCTGAGAAGTGGGTTACAGCGCGTACAGTGACATTAACAGGCGACTTGACTGGTAACTTCACAATTGACGGAAGCGGAAATGTTTCTACAAACGTGCAAGTTAACGACAATAGCCACAATCACTCTGGTGAGAACATCACTAGCGGTACAATTGCTAACGCTCGTCTAATCAAGACAAGTCGTACAAGTCAGGGTATCGTTCAAGTAACAAATGATGTTCGCACAGCAGACCCAGTGAATGCTTCTGATCCGCATCAAGCTCTTTCGGCTGGTGCAGGTAAGACGCTTTCAGAACGCATCGATTTGTTCACTCCAGACGGTGGTACTGGTGAGAGTGTTAAATACAGAGACTATATTCAAGTTGGCACAGTAAGAATGTCAACGAACAATCAAGGCGTGCTGGAGTTCACTTTCGGTCACGCGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4d4e0cbeaae905688a0b98fcc4b1963c6aa9f0d564e59435f32764e6093034d7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6714
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio natriegens Bacteriophage CZ01 Zhu,L. and Zhu,D. 2015-12 — GenBank