Protein

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Genbank accession
XDR00021.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSNNTINHVSDKSIYVTFDPTGTDWPDTITNVQDALEKIGSWARTDTGLPIATTSVRGIAQIATEADIDAGTDNTKIVTPKLLAYRMQNPKASQTVWGYTKYSTDAESTTVTNDASSITPRSLNYVFNNRKGTESVWGSSKIATTAQAVAGTDNTVTMTPLKVKQAIASLVPVQSSATESSQGLVQLATVAQVQAGTIREGYAISPYTFIRLTATESNLGVIRIASQAEANAGTDDTKAITAKKLINTRATGSQFGVVKLATTVGYVANTALSSNAYVLPSDRSAVINGSLYENSAIHNNKYQTWTDLDWHFPVGAIVMTGFQTDHGSLYICDGRSLNKNDYPLLFERIGYTFGGGGDWFNIPDCRGVAVRGHDRGRGLNPNRGYGTYEGDMLGWHEHPLQLIYQNGGNIPKWQAVYELKSAEKNDQSARVFDASITKATGVGGEETRMKNIALNYVIRTQ
Physico‐chemical
properties
protein length:461 AA
molecular weight: 49881,98980 Da
isoelectric point:6,66968
aromaticity:0,08243
hydropathy:-0,34425

Domains

Domains [InterPro]
DC_0176
STR
1–400
DC_0176
SSF69349
STR
242–321
SSF69349
IPR037053
ATT
301–366
IPR037053
SSF88874
STR
304–460
SSF88874
IPR011083
ATT
315–368
IPR011083
XDR00021.1
1 461
Architecture
STR
ATT
STR
STR 1-300 | ATT 301-368 | STR 369-460 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDR00021.1
1 461
Domain Start End Length (AA) Confidence
N-terminal 1 371 371 0,6820
Central domain 372 450 80 0,0007
C-terminal 451 461 10 0,9964
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-371
Central
372-450
C-terminal
451-461

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KM5a1_KLB10
[NCBI] 		3141563 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella sp. M5a1
[NCBI] 		2759708 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDR00021.1 [NCBI]
Genbank nucleotide accession
PP505786.1 [NCBI]
CDS location
range 155929 -> 157314
strand +
CDS
ATGAGTAACAATACAATCAACCACGTAAGTGATAAATCCATTTACGTGACATTTGACCCAACAGGTACTGATTGGCCTGATACCATAACCAACGTACAAGATGCGTTGGAAAAAATAGGTAGTTGGGCGCGTACTGATACTGGGCTTCCTATCGCAACAACTTCTGTTCGTGGTATTGCTCAGATCGCAACCGAAGCTGATATTGACGCTGGCACGGATAACACTAAGATTGTTACTCCGAAACTGTTAGCATATCGTATGCAGAACCCTAAAGCATCACAAACCGTATGGGGTTATACGAAGTATTCGACTGATGCGGAATCTACAACCGTAACTAACGATGCATCGTCTATTACTCCGCGATCTCTGAACTATGTGTTCAATAACCGTAAAGGTACAGAATCGGTTTGGGGTTCTTCTAAAATCGCTACCACTGCACAGGCGGTTGCTGGTACAGATAACACTGTAACTATGACTCCGCTTAAAGTCAAGCAAGCGATCGCGTCCCTGGTTCCGGTTCAGTCAAGTGCGACCGAAAGCTCGCAAGGTCTGGTACAACTGGCAACAGTTGCACAGGTTCAGGCTGGTACGATCCGTGAAGGGTATGCAATTTCACCTTATACGTTTATACGTTTAACTGCAACTGAAAGCAACCTGGGCGTTATTCGCATCGCATCACAGGCAGAAGCAAACGCAGGTACTGATGACACCAAAGCGATTACTGCGAAAAAATTAATCAATACCCGTGCAACTGGTTCCCAGTTCGGTGTTGTCAAATTAGCAACAACTGTTGGTTATGTGGCAAACACCGCACTTTCTTCTAATGCTTATGTATTGCCTAGCGATCGTAGTGCGGTAATTAATGGTTCTCTTTATGAGAATAGCGCAATACATAACAACAAATATCAGACGTGGACAGATCTTGATTGGCATTTCCCAGTAGGTGCTATTGTCATGACTGGTTTCCAGACTGACCACGGTAGTTTGTATATTTGTGATGGACGTTCACTGAATAAAAATGATTACCCGTTACTGTTTGAGCGTATAGGATATACATTTGGTGGTGGCGGTGATTGGTTTAACATTCCAGACTGTCGAGGCGTTGCAGTACGTGGTCATGACCGTGGGCGTGGACTAAACCCTAATCGTGGGTATGGTACATATGAAGGCGATATGTTGGGCTGGCACGAACACCCATTACAGCTTATCTACCAGAACGGCGGAAACATTCCGAAATGGCAAGCAGTTTACGAACTGAAAAGCGCCGAGAAGAATGACCAAAGCGCTCGCGTATTTGATGCTTCTATAACTAAAGCTACTGGTGTGGGCGGTGAAGAAACCCGCATGAAAAACATCGCATTAAACTACGTAATTCGTACTCAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
3069f642e07fda6a11c388cce0a7128c39ad978d54b80b2fb4ea454f5e18b9bf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7225
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of 24 phages infecting the plant-growth-promoting rhizobacterium Klebsiella sp. M5a1 Gittrich,M.R., Sanderson,C.M. and Sullivan,M.B. 2025-02-21 — GenBank