Protein

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UniProt accession
A0A8S5V963 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MNNLESLATEIGKDIKGIKEQQVTKDELEAKHYLTENQTLSLEGNRLSLTNGGSVNLPTVLRSSEYRISKSDIAGNEVGATATIPINSLMNPIGIKLGDVIQSFNNNSEGADEGYWIVTGISAQGISVRKIGSRHLYSTYNDTELKQKISALESRPSFDTLTPTQRDSLRGENGHSLNATVRIEGSYRNGSTSQLNLFADVFYDGEKLTSGYTLDYYYRGFGNNNWGVLRNQTPDSTGKFSTWSATQRSGGWFEVRIEVNYRGLKTSAFTRLDNVNDGERGPQGVQGQRGPQGNVGPAGARGATGERGPAGAPGQNIVNQNGGQPIRYWAGTQAQYDAIASKDSNTIYDIFK
Physico‐chemical
properties
protein length:352 AA
molecular weight: 38324,64610 Da
isoelectric point:6,36662
aromaticity:0,08239
hydropathy:-0,67102

Domains

Domains [InterPro]
DC_2298
STR
221–352
DC_2298
IPR056923
RBD
327–350
IPR056923
A0A8S5V963
1 352
Architecture
STR
STR 221-352
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctmva1
[NCBI] 		2825656 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAG03232.1 [NCBI]
Genbank nucleotide accession
BK016225 [NCBI]
CDS location
range 2839 -> 3897
strand -
CDS
ATGAATAACCTTGAAAGTCTAGCAACGGAAATCGGTAAGGATATCAAGGGCATTAAAGAGCAACAGGTTACGAAAGATGAGCTAGAGGCAAAGCATTATCTTACTGAGAATCAAACTCTTAGCTTAGAAGGCAACCGGCTAAGTCTTACAAATGGTGGGTCTGTCAATCTTCCAACAGTTTTGAGAAGCTCAGAATATCGGATTTCAAAATCGGACATTGCCGGAAACGAAGTCGGTGCTACTGCGACAATACCAATCAATTCTTTGATGAATCCAATAGGTATCAAATTAGGAGATGTAATTCAAAGCTTTAATAACAACTCTGAAGGAGCAGATGAAGGCTACTGGATTGTAACAGGCATCAGCGCTCAAGGTATTTCTGTGAGAAAGATTGGCTCAAGACACTTGTATTCAACTTACAACGACACCGAGTTGAAACAAAAGATTTCAGCTTTAGAAAGCCGGCCATCGTTTGACACATTGACACCGACTCAACGAGATAGCTTGAGGGGTGAGAATGGTCACAGCTTAAATGCAACTGTCCGCATTGAAGGGAGTTATCGAAATGGTTCGACTAGCCAGCTAAATTTATTCGCAGATGTATTTTATGACGGAGAAAAGCTCACGAGTGGCTATACTCTTGATTACTACTATCGAGGTTTTGGAAATAATAACTGGGGGGTATTGAGAAATCAGACTCCAGATTCCACTGGAAAATTTAGTACATGGAGCGCCACCCAGCGCTCTGGTGGTTGGTTTGAAGTTCGTATCGAAGTGAATTACAGAGGTCTAAAAACCTCTGCTTTCACTCGTTTGGATAATGTCAACGATGGCGAACGAGGTCCGCAGGGTGTCCAAGGTCAACGAGGACCTCAAGGGAATGTAGGCCCTGCAGGCGCTAGAGGAGCCACAGGGGAACGTGGACCAGCAGGAGCGCCCGGCCAAAATATCGTCAACCAAAACGGTGGGCAACCGATTAGATATTGGGCAGGCACGCAAGCGCAGTATGACGCAATTGCAAGCAAAGACTCAAACACGATTTACGATATTTTTAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d275b24ed24c479734bf68d540d3183a264d1d9b5e8a363fe12cce8d10337a36
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8309
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50