Protein

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Genbank accession
ADD25716.1 [GenBank]
Protein name
putative phage structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALQIYPNGKAPLSSNQLPKWFDSIGMKRSAKHLGAVVDTTATGTRWSRLNRGGNNPTSEKVPLYPVFQGGSLGTGFVELSEGYIYKQGYLLYYKPDSALNQQLSTRNLQSDKHYMLCLSLDFSKDNTSVGKIVDNNYSSVLNQGYFEFIEYDPQTDIKTQTVYERANKSVDDATALPLVMLAAVDTNAANPQPTITPLYMTYHPLKTTKRGEKQLVGRFASNQSAYPRGEQVNLYGNNTNQTTVLVRPYPVNADDPVNRTYVIGDNNASAGAHAKTQRVPWVYKSYSEQPYGAGALGLQYTSSKPWTFPFMGRNEEAQLKEYLSMKNEATFHCHTAGLYKFDVSVMMYGSVSYNVNNRWHGLAMYVERGANAPAGMRNRFDSVQENVRDDNFTSGTSGKRSNGYGVTQLPRQTLRTHLSTNLYEGDEVFFILYCDMHDITTYGSGTRARFEHENLEIWYMGDNTTGNKDTNRLPDTDFEAGYIGGDGALNPAVSGLNELRSKNFYPATDPRYNVAAMTTTASTFWSAIAWYDAAGTFISRTVHDEGSVGVGLYHHAYVETPPAGATQFKICYRSFASGYANVGEPYATNNDPTAF
Physico‐chemical
properties
protein length:596 AA
molecular weight: 66275,82580 Da
isoelectric point:6,51116
aromaticity:0,12081
hydropathy:-0,55134

Domains

Domains [InterPro]
G3DSA:2.60.520.10
STR
65–200
G3DSA:2.60.520.10
G3DSA:2.60.520.10
STR
72–201
G3DSA:2.60.520.10
ADD25716.1
1 596
Architecture
STR
STR 65-201 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADD25716.1
1 596
Domain Start End Length (AA) Confidence
N-terminal 1 50 50 0,9482
Central domain 51 249 200 0,1153
C-terminal 250 596 346 0,9684
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-50
Central
51-249
C-terminal
250-596

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 1358
[NCBI] 		741942 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADD25716.1 [NCBI]
Genbank nucleotide accession
GQ403788 [NCBI]
CDS location
range 16694 -> 18484
strand +
CDS
ATGGCTTTACAAATTTACCCGAACGGCAAAGCGCCGCTATCGTCGAATCAGTTGCCGAAATGGTTCGATAGTATAGGCATGAAACGAAGCGCGAAACATCTCGGGGCAGTCGTCGACACGACCGCCACGGGCACACGGTGGAGCAGGCTCAATCGGGGGGGCAACAACCCCACATCGGAAAAAGTGCCACTCTATCCCGTATTTCAGGGCGGCTCGCTCGGTACAGGCTTCGTCGAGCTGTCAGAGGGCTATATCTACAAACAAGGCTATCTGCTTTATTACAAGCCCGACAGCGCACTCAATCAGCAACTATCTACGCGGAACTTGCAATCTGACAAGCATTACATGCTTTGTCTATCGCTCGACTTCTCAAAGGATAATACAAGCGTCGGCAAAATCGTCGACAACAATTACAGCAGCGTATTGAATCAAGGGTATTTTGAGTTTATCGAATACGACCCGCAGACAGACATCAAAACGCAAACCGTTTACGAGCGGGCGAATAAGAGTGTCGACGACGCGACCGCCTTGCCGCTTGTCATGCTCGCAGCCGTCGACACTAATGCGGCGAATCCGCAGCCGACCATTACGCCGCTATATATGACCTACCACCCGCTCAAAACAACGAAGCGCGGCGAGAAGCAACTCGTCGGACGGTTCGCTTCGAATCAGTCGGCATATCCACGGGGCGAGCAAGTCAACTTATACGGGAACAACACGAATCAAACAACGGTACTTGTAAGACCATACCCCGTTAACGCCGACGACCCCGTGAATCGCACATACGTCATCGGCGACAATAATGCGTCAGCGGGGGCACACGCGAAGACGCAGCGCGTGCCGTGGGTCTATAAGTCTTACAGCGAGCAGCCATACGGCGCAGGGGCGCTCGGTCTGCAATACACCTCGAGCAAGCCGTGGACTTTCCCGTTCATGGGTCGAAATGAAGAAGCTCAATTAAAAGAGTATCTAAGCATGAAAAACGAAGCGACGTTTCATTGCCACACGGCAGGCTTATATAAGTTTGACGTGTCCGTCATGATGTATGGCTCGGTATCATACAATGTCAACAATCGGTGGCACGGGCTTGCGATGTACGTCGAACGAGGGGCGAATGCACCCGCAGGAATGCGAAATCGGTTCGACAGCGTACAAGAAAACGTGCGCGACGACAACTTCACAAGCGGAACAAGTGGGAAACGGTCGAACGGTTACGGCGTCACACAGCTACCCCGTCAGACGCTGCGCACTCACTTGTCGACCAACTTATACGAGGGCGACGAGGTATTCTTTATTTTGTATTGTGACATGCACGACATCACGACATACGGCTCGGGAACTCGTGCCCGCTTCGAGCACGAGAACCTCGAAATATGGTACATGGGCGACAATACGACAGGGAACAAGGACACGAACCGACTACCTGACACAGACTTCGAAGCAGGTTACATCGGGGGCGACGGAGCACTTAACCCCGCCGTGTCAGGATTGAACGAGCTACGCTCGAAAAATTTCTACCCCGCGACCGACCCCCGTTATAACGTCGCCGCCATGACGACGACCGCTTCGACATTTTGGTCAGCTATTGCATGGTATGACGCTGCGGGCACATTCATATCTCGCACCGTTCACGACGAGGGCAGCGTCGGCGTAGGCTTATATCATCATGCTTACGTCGAAACACCGCCCGCAGGCGCGACACAGTTCAAAATATGCTATCGCAGTTTTGCGAGCGGGTATGCCAATGTAGGCGAACCCTATGCAACTAATAACGACCCTACGGCGTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7f9a87390ecdaf2bb79f7af1124446be8d256c42e4042ee7c80ef585684b7138
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5234
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome organization and characterization of the virulent lactococcal phage 1358 and its similarities to Listeria phages Dupuis,M.E. and Moineau,S. 2010 20061452 GenBank