Protein

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Genbank accession
YP_009289334.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALISQSIKNLKGGISQQPDILRFAEQGSVQINGWSSESEGLQKRPPMIHLKTLGAAGYVGAQPYVHLINRDEFEQYFVVFTGEDIKVFDLDGKEYQVRGDRSYVRTANPREDLRMVTVADYTFVTNRKVVVQSNDQSVNLPGFKDQGDALINVRGGQYGRRLSIEFNGAERAAVQLPDGSQPAHVNEVDGQAIAEKLAVQLRNNLGNPNNEQDPNKWRFNVGPGFIHILAPNNDNVWGLQTKDGYADQLINPVTHYTQSFQKLPINAPDGYIVKIVGDTSKTADQYYVRFDLNRKVWVETIGWNTRTHLHYHTMPWALVRASDGNFDFKYLEWGARTVGDDTTNPYPSFTGQTINDIFFFRNRLGFLSGENIILSRTSKYFNFFPASVSNYSDDDPIDVAVSHNRVSTLKYAVPFSEELLLWSDQAQFVLTASGILSSRSVELNLTTQFDVQDRARPHGVGRNVYFASPRASFTSINRYYAVQDVSSVKNAEDMTAHVPNYIPNGVFSISGTTAENFAAILTSGAPNRVYIYKFLYIDEEIRQQSWSHWDFGDNVTVFAAQVINSTMTVLMGNEHAVWMGRLHFTKNSIDIPGEPYRLYIDAKRKYTIPAGTYNDDTYQTSISLATIYGMNFTRGRVSVVFPDGKIVEIDQPINGWSSDPILRLDGNQEGQVVYIGFNIPFTYTFSKFLIKKTAEDGSTATEDIGRLQLRRAWVNYEDSGAFTIRVNNLSREFIYTMAGARLGSDNLRVGGSNTGTGQYRFPVVGNAQTNIVTIESDASTPLNIIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:801 AA
molecular weight: 89848,28140 Da
isoelectric point:5,93356
aromaticity:0,11610
hydropathy:-0,37016

Domains

Domains [InterPro]
IPR058003
TTP
1–801
IPR058003
YP_009289334.1
1 801
Architecture
TTP
TTP 1-801
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009289334.1
1 801
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9927
Central domain 143 341 200 0,0837
C-terminal 342 801 459 0,1844
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-341
C-terminal
342-801

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage SH2
[NCBI] 		1805465 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Teetrevirus
Host Citrobacter freundii
[NCBI] 		546 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009289334.1 [NCBI]
Genbank nucleotide accession
NC_031092 [NCBI]
CDS location
range 23731 -> 26136
strand +
CDS
ATGGCTCTCATTAGTCAATCAATCAAGAACCTCAAGGGTGGTATCAGCCAACAGCCAGATATTCTCCGGTTCGCTGAACAAGGTAGCGTACAGATTAACGGTTGGTCTTCTGAGTCCGAGGGTCTCCAGAAGCGCCCACCGATGATTCACCTTAAGACCCTTGGTGCCGCTGGGTATGTGGGTGCGCAACCTTACGTTCACCTCATCAACCGTGATGAGTTCGAGCAGTATTTCGTGGTGTTCACTGGTGAAGACATTAAGGTGTTCGACCTAGATGGTAAGGAGTATCAAGTCCGTGGAGACCGCTCTTATGTGCGCACAGCTAACCCACGAGAAGACCTTCGGATGGTAACGGTGGCAGATTATACCTTTGTGACTAACCGCAAGGTGGTTGTGCAGAGTAACGACCAATCGGTCAACCTTCCGGGTTTTAAAGACCAAGGTGATGCGCTGATTAATGTTCGTGGTGGACAATATGGGCGTAGATTATCAATCGAGTTCAACGGGGCTGAGCGTGCTGCTGTGCAACTACCAGATGGTTCACAACCAGCACACGTTAACGAGGTGGACGGTCAGGCTATCGCTGAGAAGCTGGCGGTGCAGTTGAGGAACAACCTTGGGAATCCAAACAACGAGCAAGACCCGAATAAGTGGCGCTTCAACGTTGGCCCCGGATTCATCCATATCCTTGCGCCAAATAACGATAACGTTTGGGGACTACAGACTAAGGATGGTTACGCAGACCAGCTAATCAACCCTGTAACTCATTACACTCAGTCGTTCCAGAAGCTGCCTATTAACGCGCCAGATGGGTACATCGTGAAGATTGTTGGTGATACCTCAAAGACTGCCGACCAGTATTACGTTAGGTTCGACCTCAACCGTAAGGTGTGGGTAGAAACAATTGGATGGAACACAAGGACTCACCTACACTACCACACGATGCCTTGGGCGTTGGTACGTGCTTCTGACGGGAACTTTGACTTCAAGTACCTTGAGTGGGGTGCTCGTACTGTGGGTGATGATACAACCAACCCATACCCATCGTTTACCGGACAGACAATCAATGATATTTTCTTCTTCCGTAACCGTTTGGGGTTCCTTAGTGGGGAGAACATCATCTTGTCTCGCACCTCGAAATACTTCAACTTTTTCCCGGCCTCCGTGTCAAACTACTCCGACGATGACCCAATCGACGTTGCGGTTAGCCATAACCGGGTGTCAACCTTGAAGTATGCCGTTCCGTTCTCCGAAGAGTTACTCCTGTGGTCTGACCAAGCGCAGTTCGTTCTGACAGCCTCTGGTATACTTTCGAGTCGCTCCGTAGAGTTGAACCTTACGACTCAGTTCGACGTGCAAGACAGGGCACGCCCACATGGTGTAGGACGTAATGTATACTTTGCGTCACCTCGCGCTTCCTTCACATCCATTAACCGATACTATGCGGTACAGGATGTAAGCTCTGTGAAGAACGCAGAGGACATGACGGCCCACGTTCCGAACTACATACCGAATGGGGTATTTAGTATCTCAGGTACAACTGCTGAGAACTTCGCGGCTATCCTTACGAGCGGAGCACCGAACCGAGTGTATATCTACAAGTTCCTCTATATTGATGAGGAAATCAGGCAGCAGTCGTGGTCTCATTGGGACTTTGGGGACAACGTTACGGTGTTTGCAGCACAGGTGATAAACTCAACAATGACTGTATTGATGGGCAATGAACACGCTGTGTGGATGGGACGCTTACACTTCACTAAGAACTCCATAGACATTCCGGGAGAGCCTTACAGGTTATACATCGACGCTAAGAGGAAATACACCATCCCTGCCGGGACGTATAATGACGATACCTACCAGACGTCAATAAGCCTCGCAACAATTTATGGGATGAACTTCACTAGGGGTAGAGTGTCTGTGGTCTTTCCTGATGGGAAGATTGTAGAGATAGACCAGCCAATCAACGGGTGGAGTAGCGACCCAATACTGAGACTTGATGGAAACCAAGAGGGACAAGTGGTTTATATTGGGTTCAACATCCCGTTCACTTATACGTTCTCGAAGTTCCTCATTAAGAAGACTGCTGAGGACGGCTCGACGGCTACCGAGGATATCGGGCGTTTACAGCTTCGGCGTGCATGGGTAAACTATGAGGACTCTGGAGCGTTCACCATCCGTGTGAACAACCTGTCCCGTGAGTTCATCTACACGATGGCTGGTGCTCGCTTGGGTTCTGACAATCTGCGTGTTGGTGGGTCGAACACTGGCACAGGGCAGTACCGCTTCCCGGTGGTGGGTAATGCGCAGACGAACATAGTAACTATCGAGTCAGATGCGTCAACACCACTGAACATCATTGGGTGCGGTTGGGAGGGGAACTACCTTCGTCGTTCTTCTGGCATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5ccc06e506b1d9450bf0318a8bffc29cf550dcad7c50e4539d14b2feec06cff7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8939
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of five Podoviridae phages infecting Citrobacter freundii Hamdi,S., Rousseau,G.M., Labrie,S.J., Saied Kourda,R., Tremblay,D.M., Moineau,S. and Ben Slama,K. — — GenBank