Protein

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Genbank accession
WPK40709.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGYELRLSNNYYQNRELTSFPSYQEVVSDWSKATSVNLYDAWEGKAIGGVTAGWSATSILSYTRTPDPISTNAASLYSYALYMDQVSDFNITIKISSNSIRNNRLGLCVAGQKGKYISAVRSLGNTSSSGSGRNWELILDNNKTRTILSSKTIGINSPAGATSTSSTGYLGWSNRYTIINVIRENNKITAKCSDWNSNVILDNSVFTIDLNDDILTDFKTSALFGFVSGNQDLCTFEVLSFSAKCYNKIPGLNVPDNYISSNLLSISMPGYNSAGYEKAFSESMIWMVENFASSSPPQNAIKGQLWYKTEGPGTQGSFYVYVGEPGEFTNLAKWHPLTQGTLDLLSAHINDKNDPHQVTKEQIGLGLVDNVNTFDKTLNLADVLNKAAARNNLSIYGKNETYNSQEYNNLFVDKSNSSSPDSELLGGLDSTAYVKKQTPFVTSSITSSVTSGDVIVMNDNSFRLAYKPNYGTSLILGGTVTDIHSQNNTTAVSMNMVTNNTLDNGIQFVFYDTGAINTPLVANSIISFKADNLYIGSGNLAFHDRRPPTAAEVGALAWNGTAVDSYLLNGKINSTSPGANTIAVRYTPSNLPDANGGYLSASSFIMTYTNADPMSVNAQVTFRNNNTNDNYVRFASRDQLVTYLGYDWKVEIDMPKGLASFSDTNLTGGSFFVINTLNLSITKLGTGLYRFYFTTLRPTNTNYAVMTQCMSEGHVGAIEGDIVNYSKAFRAVSIYCYNKTLSYFDVASTLNSNFNNNDGTGYQDYSREYDDPGLASLQVYFSSWVNL
Physico‐chemical
properties
protein length:787 AA
molecular weight: 86190,61540 Da
isoelectric point:5,15856
aromaticity:0,11309
hydropathy:-0,27992

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK40709.1
1 787
Domain Start End Length (AA) Confidence
N-terminal 1 32 32 0,7035
Central domain 33 231 200 0,4809
C-terminal 232 787 555 0,4484
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-32
Central
33-231
C-terminal
232-787

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Paride
[NCBI] 		3092178 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK40709.1 [NCBI]
Genbank nucleotide accession
OR805295 [NCBI]
CDS location
range 258973 -> 261336
strand -
CDS
ATGGGTTACGAATTACGTTTATCAAATAATTATTACCAAAATAGAGAACTAACTTCTTTTCCTAGTTACCAAGAAGTTGTTTCTGATTGGTCAAAAGCTACATCAGTTAACTTGTATGATGCATGGGAAGGAAAAGCAATAGGCGGCGTCACTGCAGGATGGTCAGCTACTTCTATTCTTTCTTACACAAGAACTCCCGATCCTATATCAACTAATGCAGCATCGTTATATAGCTATGCGTTATACATGGATCAAGTTAGTGATTTTAATATTACAATAAAAATATCTAGCAATTCTATAAGAAATAACAGGTTAGGTTTGTGTGTTGCTGGACAAAAAGGAAAATATATATCTGCTGTCCGGTCATTAGGTAACACATCTAGCAGCGGATCCGGAAGGAATTGGGAACTAATTTTAGATAACAATAAAACTAGAACGATTCTTTCTAGTAAAACAATAGGAATTAATAGTCCTGCTGGGGCTACTTCTACATCATCTACAGGATATCTCGGTTGGTCAAATAGATATACAATTATCAATGTAATTAGAGAAAATAATAAAATAACAGCTAAGTGTTCCGACTGGAATTCTAACGTAATATTAGATAACTCAGTGTTTACTATAGATCTAAACGATGATATACTAACTGATTTTAAAACATCTGCATTATTTGGATTTGTATCAGGTAATCAGGATTTATGTACTTTCGAGGTATTATCTTTTTCTGCAAAGTGCTATAACAAGATTCCAGGATTAAATGTACCTGATAACTATATTTCTTCTAACTTACTTTCTATATCTATGCCAGGATATAATTCGGCAGGTTACGAAAAAGCATTTAGTGAATCCATGATATGGATGGTAGAAAACTTTGCTAGTTCTTCTCCTCCCCAAAATGCTATAAAAGGACAACTATGGTATAAAACAGAAGGACCCGGTACACAAGGATCATTTTATGTATATGTAGGAGAACCTGGCGAATTTACAAATCTAGCAAAATGGCATCCATTAACTCAGGGCACATTAGATTTACTTAGTGCTCACATTAATGATAAAAACGACCCTCATCAAGTTACAAAAGAACAGATAGGGCTAGGGTTAGTAGATAACGTAAATACATTCGATAAAACACTGAACCTAGCAGATGTTTTAAATAAGGCAGCCGCTAGAAATAATTTATCTATATATGGTAAAAACGAAACATACAATTCCCAAGAATATAATAATCTATTCGTAGATAAATCAAATAGTTCTTCTCCAGATTCAGAATTACTAGGCGGGTTAGATAGCACAGCTTACGTTAAAAAACAAACACCGTTTGTTACTTCGTCTATAACTTCATCTGTTACATCAGGAGATGTAATAGTAATGAATGATAATAGTTTCAGATTAGCATATAAACCCAATTATGGAACTAGTCTAATACTAGGCGGTACTGTTACAGATATTCATTCTCAAAATAATACTACTGCTGTTAGTATGAATATGGTTACTAACAATACATTAGATAACGGAATACAGTTTGTCTTCTATGATACTGGTGCAATAAATACACCATTAGTAGCAAATAGTATCATATCATTTAAAGCAGACAATCTATATATAGGTTCTGGTAATTTAGCATTCCACGACAGACGGCCGCCGACCGCTGCCGAAGTAGGAGCATTGGCTTGGAACGGTACTGCCGTAGATTCATATTTACTTAACGGTAAAATAAATTCAACTAGTCCGGGTGCCAACACAATAGCAGTAAGATATACACCTTCTAATCTTCCTGATGCAAACGGCGGGTATCTATCTGCATCTTCATTTATTATGACATACACTAATGCAGACCCTATGTCAGTAAATGCCCAAGTAACATTTAGAAATAATAATACTAATGACAATTATGTTCGTTTTGCTAGCAGGGACCAATTAGTAACTTATTTAGGATATGACTGGAAAGTAGAAATAGATATGCCAAAAGGTCTGGCATCATTCTCAGACACAAATCTTACGGGCGGTTCCTTCTTTGTAATAAACACTTTAAACTTATCTATAACAAAATTAGGAACAGGATTATATAGATTCTATTTTACTACTTTGCGTCCAACAAATACAAATTATGCTGTTATGACACAATGTATGTCAGAGGGGCACGTAGGTGCCATAGAGGGAGATATTGTTAACTATTCTAAAGCATTTAGAGCAGTGTCTATATATTGCTATAACAAAACATTATCATACTTTGACGTTGCTAGTACATTAAACAGTAACTTTAATAACAACGACGGAACCGGTTATCAGGATTATTCGAGGGAATATGACGATCCGGGATTAGCATCATTACAAGTATATTTTTCATCCTGGGTAAATCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
de99afe3cb127279356adeceb3e54cfd026dee43387cb5bf1db02cf1cc516bf9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2830
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Paride can kill dormant, antibiotic-tolerant cells Maffei,E., Harms,A. and Humolli,D. — — GenBank