Protein

View in Explore
Genbank accession
YP_009021398.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTRNVEELFGGVITAPHQIPFTYKSNVGGETFLSLPFYPVTGVVTINGGMQVPLDNFEIDGNTLNLGRALSKGDVVYCLFDKILSPEDTAKGIRIYKFQAVGGETEFTPDFTSYGVQSLYIGGEYKTPEIEYSYDSTTGKVSLQTALTAGVWVVAEMSVKQPNISPAFDRSIQEIARSANVKDSEVIVSTDTISLLDGKKVIYDIAAQTSYGLPTIPDGSVISSVSNGQLTYNPGNIAVSLVPVPNSAEELSVELGNNGGQLVTTKSPIANTIRRSIDERNSDVISLKDFVLPSDLAEDYSPAIARLMVYLETLSTIKYVGTGADCGGIIIDAPGNIKVTQTINFKNTRNLTLRDWSIKPHSNFTRGDYLLAFTSNVVDQYAHENLKLSGVTLDGVFEANCLSLQDFLRVKVVDCSFYRFFEYGIRTENINNGSHELMASNIDIFQSFDGTYPAHIINGIGLQNENNDNHLNNSVIGPVFSHPIVCTDYVSPVKSGGGAFFMSNTHTYSARRTLLIDAAGVYINNCYFDGDLIVASKRKLSINNCFFQVVGSVGNVNFITNTGDVGEWNIKDNNFVNRDNAPNVRMMPSLSGVNVYESFIQDNAGTNVTKVRVFEDDVQSQTFTPTDWTQTADGNYVETTFPAYKGNRQATVTALSVEDRTRMFTVIRVGTVLRVYCWYTDGSGKAVPTANIVVSSSGRTAPDVGGTV
Physico‐chemical
properties
protein length:708 AA
molecular weight: 77197,64510 Da
isoelectric point:4,88926
aromaticity:0,09605
hydropathy:-0,11257

Domains

Domains [InterPro]
DC_0063
STR
1–704
DC_0063
G3DSA:3.30.2020.50
ATT
156–248
G3DSA:3.30.2020.50
YP_009021398.1
1 708
Architecture
STR
ATT
STR
STR 1-155 | ATT 156-248 | STR 249-704 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009021398.1
1 708
Domain Start End Length (AA) Confidence
N-terminal 1 299 299 0,9942
Central domain 300 615 317 0,9912
C-terminal 616 708 92 0,9586
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-299
Central
300-615
C-terminal
616-708

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB-SalM-SJ2
[NCBI] 		1458849 Uroviricota > Caudoviricetes > Pantevenvirales > Cvivirinae > Kuttervirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009021398.1 [NCBI]
Genbank nucleotide accession
NC_023856.1 [NCBI]
CDS location
range 110907 -> 113033
strand +
CDS
ATGACCAGAAATGTAGAAGAATTATTCGGCGGCGTAATCACAGCTCCCCACCAGATTCCTTTCACGTATAAATCAAATGTCGGTGGAGAAACTTTCCTTTCCTTGCCGTTCTATCCTGTCACTGGCGTAGTCACAATTAACGGCGGCATGCAAGTTCCGTTAGACAACTTCGAGATAGACGGGAATACGTTGAATCTCGGGCGCGCATTGTCCAAAGGCGATGTTGTGTATTGCTTATTCGATAAAATTCTTTCACCAGAAGACACTGCCAAAGGCATCCGCATATACAAATTTCAAGCCGTGGGTGGAGAAACTGAATTCACGCCTGACTTTACTTCTTATGGTGTACAGTCTCTTTATATCGGTGGCGAATACAAAACACCCGAAATTGAATATTCCTATGACAGCACGACAGGGAAAGTATCTTTGCAAACTGCACTGACTGCAGGCGTTTGGGTAGTCGCTGAAATGTCTGTTAAACAACCGAATATCAGTCCGGCGTTTGACCGAAGTATTCAAGAAATCGCCCGTTCTGCTAATGTAAAAGACTCTGAAGTCATCGTTAGTACGGACACCATATCTTTATTGGATGGGAAGAAAGTTATTTATGACATAGCGGCGCAAACCAGTTATGGCTTACCAACCATTCCTGATGGTTCTGTCATTTCTTCTGTAAGCAATGGGCAGCTTACTTACAATCCAGGAAATATTGCAGTTTCACTGGTTCCCGTGCCTAATTCTGCGGAAGAGTTATCTGTAGAACTCGGTAACAATGGGGGCCAATTGGTAACTACAAAGTCACCTATAGCTAATACTATTAGAAGAAGTATTGATGAACGTAATTCTGATGTAATTAGCTTAAAAGACTTTGTTCTTCCAAGTGACCTCGCTGAGGATTATTCTCCAGCTATTGCACGGTTGATGGTTTACCTAGAGACACTAAGCACCATTAAGTATGTTGGTACAGGTGCTGATTGCGGTGGGATAATTATTGATGCTCCGGGTAATATTAAAGTAACTCAGACCATTAACTTTAAGAATACCAGAAACCTGACCCTTAGAGATTGGAGTATTAAACCTCACTCTAATTTTACTCGTGGAGATTACTTGCTTGCATTTACGTCCAACGTGGTTGACCAGTATGCACATGAGAACTTAAAGCTTTCTGGGGTGACACTGGATGGTGTGTTTGAGGCCAACTGTCTTAGCCTGCAAGACTTCTTGAGAGTCAAGGTGGTCGATTGTTCTTTTTACCGTTTTTTTGAATATGGTATCCGCACGGAGAACATCAACAATGGTTCTCATGAGTTGATGGCATCTAATATTGATATATTCCAGTCTTTTGATGGAACGTACCCTGCACATATTATCAATGGTATTGGGTTGCAGAATGAGAACAATGACAACCATTTGAACAACTCAGTGATTGGTCCAGTATTCTCCCATCCAATTGTATGTACGGATTATGTGTCCCCTGTTAAATCAGGTGGTGGTGCATTCTTCATGAGCAACACTCACACGTATAGTGCAAGACGTACTCTGCTTATCGATGCAGCAGGTGTTTATATTAATAACTGTTACTTTGATGGTGACTTGATTGTAGCGTCTAAGCGTAAACTGAGTATCAATAACTGCTTCTTCCAAGTGGTTGGTTCTGTGGGTAACGTTAATTTTATTACTAACACAGGTGATGTTGGTGAGTGGAACATCAAGGATAACAACTTCGTTAACCGAGATAATGCACCTAACGTCCGTATGATGCCATCACTCTCTGGTGTTAATGTGTATGAGAGCTTCATCCAAGATAACGCAGGAACTAACGTAACTAAGGTTCGTGTGTTTGAAGATGATGTGCAATCTCAGACATTCACACCCACAGACTGGACACAGACAGCCGATGGCAACTATGTAGAGACTACTTTCCCTGCATACAAAGGAAACCGTCAGGCAACTGTGACAGCTTTGTCTGTAGAAGACAGGACACGTATGTTCACTGTCATCCGAGTAGGGACAGTATTGCGTGTATATTGCTGGTATACAGATGGTAGTGGAAAGGCAGTCCCTACAGCTAACATTGTGGTAAGCTCAAGTGGACGGACAGCACCAGATGTTGGGGGTACTGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
093d6941437ed78ed600a48f4063bb1e571782b29cf17e1b5009bc7b5b8a9b3c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7077
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of two Salmonella enterica Typhimurium phages effective in limiting Salmonella in swine Zhang,J., Hong,Y., Harman,N.J., Singh,A. and Ebner,P.D. 2022-06-16 — GenBank