Protein

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Genbank accession
YAO59830.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MIYSQLETLNKCLIDWNVNYSVYPYNGYTINEVLCQFFDAINKGIITINEYTNMVGALMDWVRKEGLKDEVNKALDKMIEDGTLDNIINQKLLSDILQLVEDTKSDLENNIGEVEEKVNSDIGKVKEELKENVNEIEKNLNVKFEELGTDVNDKIANVKKALAIQKGVIVFLNEYGEQAKEGTEEEDWSLAFNYVFKNVVKDTVATIIWNGRLKIKSTINLPKHVNISGVGLPWSGLTPTVDFVGEYVITDLNVPSHNSIKNIYMDFAYNKRIKGLKALNPYDYNEYKFLVADGIGDTFLDIGGKDISQSTRIEDCVAYRENRGEGSIVELRNCQEFYIENNKFMYKEQGKHECIWCDGVTNTTFIHNSLAFTDETALKLLAYNYPKRLNGNVIQDNLFEGIGSKGCVNIIGSSDPDLEGSYNTIRDNSYFSSTQMISLGNIANTYVNDPVKINSLGGDRRTYLFNRYNATSKTPYGSVEEWCDGAYKMTKSWFKIIPTQEGEPSYFYMTDEGGKERTITITSDGQFKIV
Physico‐chemical
properties
protein length:530 AA
molecular weight: 60141,03520 Da
isoelectric point:4,81127
aromaticity:0,10566
hydropathy:-0,42057

Domains

Domains [InterPro]
DC_0396
ATT
1–232
DC_0396
G3DSA:1.20.120.20
STR
42–190
G3DSA:1.20.120.20
SSF58113
STR
92–185
SSF58113 IPR011050
Coil
Unmapped
97–117
Coil Coil IPR011050
YAO59830.1
1 530
Architecture
ATT
STR
ATT 1-232 | STR 233-454 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAO59830.1
1 530
Domain Start End Length (AA) Confidence
N-terminal 1 186 186 0,9902
Central domain 187 470 285 0,9796
C-terminal 471 530 59 0,8388
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-186
Central
187-470
C-terminal
471-530

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage PhiCP17-i
[NCBI] 		3454120 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens type A
[NCBI] 		37763 Bacillota > Clostridia > Eubacteriales > Clostridiaceae > Clostridium > Clostridium perfringens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAO59830.1 [NCBI]
Genbank nucleotide accession
PV983592.1 [NCBI]
CDS location
range 10163 -> 11755
strand +
CDS
ATGATTTATTCTCAATTAGAAACATTGAATAAGTGTTTAATAGATTGGAACGTAAATTATTCTGTATATCCTTACAACGGTTATACAATAAATGAAGTGTTGTGCCAATTTTTCGACGCAATAAACAAAGGTATTATAACTATCAATGAATATACTAACATGGTAGGAGCATTGATGGACTGGGTAAGAAAAGAAGGTTTAAAAGATGAGGTTAACAAAGCGCTAGATAAAATGATTGAAGACGGCACACTTGACAATATAATAAATCAAAAATTGTTAAGCGATATATTACAGTTGGTAGAGGACACAAAATCAGACTTAGAAAACAATATTGGAGAAGTTGAAGAAAAAGTAAATTCAGATATAGGAAAAGTTAAAGAAGAGTTAAAAGAGAATGTCAATGAAATTGAAAAAAACTTAAATGTTAAGTTTGAAGAACTAGGCACAGATGTGAACGATAAAATCGCAAATGTCAAAAAAGCGTTAGCAATTCAGAAAGGTGTTATAGTTTTTCTAAATGAATACGGCGAACAGGCTAAGGAAGGAACAGAGGAGGAAGACTGGTCACTTGCATTTAATTATGTGTTTAAGAATGTTGTAAAAGACACAGTAGCAACTATAATATGGAATGGTAGATTAAAAATAAAGTCTACAATAAACTTACCAAAACACGTAAACATTAGCGGAGTTGGGTTGCCCTGGAGTGGTTTAACGCCTACAGTAGATTTTGTAGGAGAATATGTTATCACCGACTTGAACGTTCCTTCTCATAATAGTATTAAAAATATATACATGGACTTTGCTTATAATAAGAGAATTAAAGGACTTAAAGCATTAAACCCTTACGATTATAATGAGTATAAGTTTTTAGTTGCGGACGGTATAGGAGACACCTTCTTAGACATAGGAGGTAAGGACATATCACAGTCAACTAGGATAGAGGATTGCGTGGCATACAGAGAAAACAGGGGAGAGGGTTCAATAGTTGAACTAAGAAATTGTCAAGAATTTTATATTGAAAACAACAAATTTATGTACAAAGAACAAGGTAAACATGAATGTATATGGTGTGACGGTGTTACAAACACAACATTTATACACAATAGTTTAGCTTTTACAGATGAAACGGCGTTAAAACTGTTAGCCTATAACTACCCTAAGAGATTAAACGGTAATGTTATACAAGACAACCTGTTTGAGGGAATAGGTAGTAAAGGGTGTGTTAACATTATTGGTTCATCTGACCCCGACCTTGAAGGAAGTTATAACACAATTCGTGATAATTCATACTTTAGTAGCACTCAAATGATTTCACTCGGTAATATCGCAAACACATATGTGAACGACCCTGTAAAAATAAATAGTCTAGGTGGAGATAGAAGAACATACCTGTTTAACAGATACAATGCTACTTCTAAGACACCTTATGGTAGTGTTGAGGAATGGTGTGATGGAGCCTATAAAATGACTAAATCATGGTTTAAAATAATTCCAACACAAGAAGGAGAGCCGTCATATTTTTACATGACAGATGAAGGAGGAAAGGAAAGAACTATCACAATAACATCAGACGGGCAATTTAAGATAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
47088db2c5afa859aa16fda7f7fee5a59a4fa8381ffa30a9f3acd8da870f53e0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7713
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and Physiochemical characterization of two Lysogenic bacteriophages PhiCP5-17 and PhiCP17-i against Clostridium perfringens Nasim,H., Haider,Z., Mannan,S. and Rehman,S.U. 2018-02-06 — GenBank