Protein

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Genbank accession
YP_010669388.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,56
Protein sequence
MPIGINSPARNLFLLGSSGAQVVSNFFKLIDQTTATENSYRTTGLKYNEVDKKYLLSGMARNINVSPTKEFGWIEKRDETGTADWDVRVESTESGVNTYLNDMELDINDNLTVVGKTGDVPWIAKYSNGGAIDWQSTSNTADLEYFGVTSDSNGQYYACGANYAAPGPAVAFVEKFDANGNPGWGKAAFILEREVALLKIAANNRGEVVAVGYIEDDTYIYRGYIVKIDTNTGEVLWDRTLSYYGEGVFLENVTIDSKDQIYIVGDVGDNQFIVKYTAEGNLLWQSQTDVSPSGLYPRLYSQALTVNDVTESVTTIGRVYNSSTFKHNLLLSNYDRKGKLIWRRIVSQGSNVGMGYETIDNEGAFIYIAFKPQVNFSDSKYTYGKVSATGNGLGDFQYDDGDTATLIDYEYVSSGELQNDVIGRLSDGSVRNDTSDLLTYPFNANKLLFDDLATQVSNKKRQIDTSDFEYSGSPAIRPVDFPIFSLDTSNFNSSTVAIEDPRNNVTAEFSTFEGPFPGTTALKTTGINSGVQISNTYGGVVEPADGPGTGPYTLETFIYVSAYPTSGYMNVMGISFPYNPSVTYDTLVMDSAGTLYYSPSNGSLLSNPNTVPLNQWVHLAITRNGNLRSVYIDGVAMLSGYTGGNAADLPYVSLRLGTFWGAYGPFDGYFSNVRYTYQELYTSNFTPPSTAFTFTGNEAVLFCHKKYWYDSLNLNAEAVEGTSQPPTEVQLFTKNHIATPIPLLPTGSIYFDGNSSLSLTPLNVDYSTNLTLEAWINTTSTAGWSQIVCGENGDILWAVNSGKLNFGSQLNTPIPHDNQSTATINTGEWIHVVTTYDGANIKHYINGTLDSTFAETGSLNANEGTYPLRIGSRGTGTGEFMTGYIGDVRIYDRALTAGQVFQNYNASKAKYIAEQAETAPKIGPGIVYDNNLLLNYDFENKATYPSKTFTKTVVNAPTSGNGSEFGMKAVSFGNEIVVGEPWRDNGYIYICRSDGSIRTTIASPTSDGYIGNEFGFRFEADPISNRIVAQVHDYSNNGGKLRVLNGSTGALEVTISHPSPFDGTVAPLNREIGENGLAVGNGKIVASNTDYYKTGTTTRVGQVWVWDIDGTNQIAIPNPDPDNYDEFGSKITIADNKIAITGSRIDYFGDTDTVPHKVWIYDLSGNLIRTLQPPANDSSVGFGWGAYGGCFIGDNRYAVVDDTDEGGGRNSGAVHLYDYDGNFIKKLRPAEVNSGTTFRFFGYTGQQYNVGVTIKNQKIYVATGEVSRITAPPSIDIFDINGNYEKKLIGPPGDWIYAGFTVLDNDTIVVSDTSLPNNNYDGGMYIYSTNNVKNLSSSSYTGTINGPTFNSAGYFEFDGNDEISVTGAQSTGNFTQEGWIKTTNTGNYNTIISWGVHSPQQDRTLWTLPSSGVAALYFYGTGDNMISGTSNVADNEWHHIVGTWDGTTGRVYVDGVLENSGSLTAGAYTYTNTFIGKNVGGSYYQNGFIGEARIYNRALSSTEVSQNFNATRSKYGV
Physico‐chemical
properties
protein length:1517 AA
molecular weight: 165356,97680 Da
isoelectric point:4,59943
aromaticity:0,12195
hydropathy:-0,33942

Domains

Domains [InterPro]
DC_0902
ATT
1–492
DC_0902 IPR013320 IPR013320 SSF101898 G3DSA:2.60.120.200
G3DSA:2.60.120.200
STR
530–701
G3DSA:2.60.120.200 PF13385 IPR013320
PF13385
LEC
548–675
PF13385 G3DSA:2.60.120.200 PF13385
IPR006558
LEC
768–898
IPR006558 IPR006558
PTHR42535
Unmapped
812–908
PTHR42535
YP_010669388.1
1 1517
Architecture
ATT
STR
STR
RBD
STR
ATT 1-492 | STR 521-701 | STR 746-966 | RBD 1035-1312 | STR 1325-1511 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010669388.1
1 1517
Domain Start End Length (AA) Confidence
N-terminal 1 27 27 0,9733
Central domain 28 607 581 0,8836
C-terminal 608 1517 909 0,0780
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-27
Central
28-607
C-terminal
608-1517

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H9-2
[NCBI] 		2783669 Uroviricota > Caudoviricetes > Pantevenvirales > Yushanluvirus > Yushanluvirus satich
Host Synechococcus sp. WH 8102
[NCBI] 		84588 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669388.1 [NCBI]
Genbank nucleotide accession
NC_070960 [NCBI]
CDS location
range 112601 -> 117154
strand -
CDS
ATGCCAATTGGAATTAATAGTCCTGCCAGAAACCTATTCCTGTTAGGTTCGTCTGGAGCACAAGTTGTCAGTAACTTTTTCAAGTTAATTGATCAAACCACAGCGACAGAAAATAGTTACCGAACAACTGGATTAAAATATAATGAGGTTGACAAAAAGTATTTGCTATCAGGAATGGCAAGAAATATCAACGTCTCCCCCACTAAAGAGTTTGGTTGGATTGAAAAAAGAGATGAAACAGGAACTGCTGACTGGGATGTAAGAGTAGAGTCAACAGAATCTGGTGTCAATACATATCTAAATGATATGGAGTTAGACATCAACGACAATCTAACTGTTGTTGGTAAAACTGGTGACGTACCTTGGATCGCTAAGTATTCTAACGGCGGAGCAATCGATTGGCAATCAACGAGCAACACAGCTGACTTAGAATATTTTGGTGTTACTTCTGATAGCAACGGACAATACTATGCTTGTGGAGCTAATTATGCTGCTCCTGGTCCAGCAGTTGCTTTTGTAGAAAAATTTGATGCTAATGGTAATCCTGGTTGGGGTAAGGCTGCCTTTATTTTAGAGAGAGAAGTTGCCTTACTTAAGATTGCTGCTAACAATAGAGGGGAAGTAGTTGCTGTTGGTTATATCGAAGATGACACCTACATTTACAGAGGATATATCGTAAAGATTGATACTAACACTGGCGAAGTCCTATGGGATCGAACACTATCATATTACGGTGAAGGTGTTTTTCTTGAGAACGTTACAATTGATAGCAAAGATCAAATTTATATTGTAGGAGATGTTGGGGATAATCAGTTCATCGTCAAGTATACGGCAGAAGGTAACTTACTATGGCAATCACAAACTGATGTATCTCCTTCAGGTTTATATCCACGTTTATATTCACAAGCTTTAACTGTCAACGATGTTACAGAATCTGTAACTACTATAGGAAGAGTTTATAACAGTTCTACATTTAAACATAACTTACTCCTATCAAACTATGATAGAAAAGGAAAATTAATTTGGAGACGAATAGTATCCCAGGGAAGCAACGTAGGGATGGGGTATGAAACCATTGATAATGAAGGAGCATTTATTTATATTGCGTTCAAACCACAGGTAAATTTTTCTGATAGTAAGTACACTTATGGAAAAGTAAGTGCTACTGGTAATGGATTAGGTGACTTCCAATATGATGATGGAGACACCGCCACTTTAATTGATTACGAGTATGTAAGTTCTGGAGAGTTACAGAACGATGTCATCGGTAGATTGTCTGACGGTTCTGTAAGAAATGACACCAGTGACTTGCTAACCTATCCATTCAACGCTAACAAACTACTCTTTGATGACCTTGCTACTCAGGTCTCTAATAAGAAGAGACAGATAGATACTTCTGATTTTGAGTATAGTGGTAGTCCTGCTATTAGACCAGTAGATTTCCCAATTTTTTCATTAGATACCTCAAACTTTAATTCAAGCACAGTTGCTATTGAAGATCCCAGAAATAATGTCACTGCCGAGTTCAGTACCTTCGAGGGTCCTTTCCCTGGTACGACAGCTTTAAAAACAACTGGTATTAACAGTGGCGTTCAGATCTCCAATACATATGGTGGTGTTGTTGAACCTGCCGATGGTCCTGGAACTGGTCCATACACTTTAGAAACATTTATTTATGTCAGTGCTTATCCAACATCTGGATATATGAATGTGATGGGAATAAGTTTTCCATACAATCCAAGTGTTACGTATGATACTTTGGTGATGGATAGTGCTGGAACATTATACTATTCTCCTTCTAATGGATCATTACTATCAAATCCAAATACTGTTCCACTAAATCAGTGGGTTCATCTAGCAATTACTAGGAATGGAAACTTACGTTCTGTTTATATTGATGGTGTTGCTATGTTGTCTGGATATACTGGTGGCAATGCTGCTGATTTGCCCTATGTTAGTTTAAGGTTGGGGACATTCTGGGGTGCCTATGGACCATTCGATGGGTATTTTAGTAATGTAAGATATACTTACCAAGAATTATATACTTCAAACTTCACTCCACCATCCACAGCATTCACATTTACTGGGAATGAAGCTGTACTTTTCTGTCATAAGAAATATTGGTATGATAGTCTCAACCTTAACGCTGAAGCTGTTGAAGGAACTTCACAACCTCCAACTGAGGTACAACTGTTTACTAAGAATCATATTGCTACTCCAATACCTCTTCTTCCAACAGGTAGTATTTATTTTGATGGCAACTCATCATTATCCCTCACTCCTCTCAACGTTGATTACTCTACGAATCTAACTTTAGAAGCGTGGATCAATACAACTAGTACAGCTGGATGGAGTCAGATTGTTTGTGGCGAAAATGGTGATATCTTATGGGCTGTTAATTCTGGTAAGTTGAACTTTGGTTCACAATTAAATACACCAATTCCACACGACAATCAATCAACTGCTACTATCAATACTGGAGAATGGATACATGTGGTAACGACATATGATGGAGCAAATATCAAACATTACATTAATGGCACTCTGGATTCTACATTTGCTGAGACTGGATCTTTGAATGCTAATGAAGGAACATACCCTCTTCGTATTGGATCTAGAGGTACTGGTACTGGTGAATTTATGACTGGTTATATTGGAGATGTCCGTATATACGACAGAGCACTAACAGCAGGACAAGTATTCCAAAATTATAATGCTTCTAAAGCAAAGTATATTGCTGAACAAGCAGAAACAGCACCTAAGATTGGTCCTGGTATTGTATATGACAACAACTTGCTATTGAATTATGACTTTGAAAATAAAGCAACATATCCATCTAAAACTTTCACTAAAACTGTAGTTAATGCTCCTACTTCTGGTAATGGATCTGAGTTTGGAATGAAGGCAGTATCATTTGGAAATGAAATAGTGGTGGGGGAACCATGGAGAGACAACGGATACATTTATATTTGTAGATCAGATGGAAGTATAAGAACTACGATTGCTTCTCCAACTTCAGACGGTTATATTGGCAATGAATTTGGATTTAGATTTGAGGCTGACCCTATTAGTAATAGAATTGTTGCTCAAGTTCATGATTACAGCAATAACGGAGGAAAACTTCGTGTGCTGAATGGATCTACTGGAGCACTAGAAGTAACAATTTCACACCCATCACCTTTTGATGGCACAGTTGCTCCACTGAACCGAGAGATTGGTGAGAACGGATTGGCAGTGGGCAATGGAAAAATTGTTGCTTCCAATACAGATTATTATAAAACTGGTACGACCACTAGAGTAGGACAAGTGTGGGTTTGGGATATTGATGGGACTAATCAAATAGCAATACCAAATCCAGATCCAGATAATTATGATGAGTTTGGATCTAAAATTACCATAGCAGATAATAAAATTGCTATTACAGGAAGTAGAATAGACTACTTTGGTGATACTGATACTGTCCCCCATAAAGTGTGGATTTATGATCTATCTGGAAATCTAATAAGAACACTACAACCTCCAGCAAATGATAGTTCAGTGGGATTTGGTTGGGGAGCATACGGTGGATGTTTTATTGGTGATAATAGATATGCTGTTGTAGACGATACTGACGAAGGGGGTGGTAGAAATTCTGGGGCAGTACATTTGTATGATTATGATGGCAATTTTATAAAAAAATTAAGACCAGCAGAGGTTAACTCTGGCACTACATTTAGATTCTTTGGTTACACAGGACAACAATATAATGTTGGAGTTACTATCAAAAATCAAAAAATTTATGTGGCAACGGGTGAAGTCAGCAGGATAACAGCACCACCATCTATAGACATTTTTGATATCAATGGAAATTATGAGAAAAAATTAATTGGACCACCAGGGGATTGGATTTATGCTGGATTTACTGTTTTGGATAATGATACCATAGTTGTCTCGGATACAAGCCTCCCTAATAATAATTATGATGGTGGAATGTATATCTATTCTACGAATAATGTAAAGAACCTCTCAAGTTCTTCTTATACTGGCACGATCAACGGACCTACATTCAATAGTGCTGGATACTTTGAGTTTGATGGCAATGATGAAATTTCTGTAACTGGAGCACAATCTACTGGTAATTTCACACAAGAAGGGTGGATAAAAACCACTAACACTGGAAATTACAACACGATTATTTCGTGGGGAGTTCATTCTCCTCAACAAGATAGAACATTATGGACTTTACCATCATCTGGAGTTGCCGCTTTATATTTCTATGGAACAGGTGACAATATGATATCTGGAACATCAAATGTTGCTGATAATGAATGGCATCATATTGTTGGAACTTGGGATGGAACTACTGGTAGAGTATATGTTGATGGTGTTTTAGAAAACAGCGGATCTTTAACAGCAGGTGCTTATACATATACAAATACTTTTATAGGAAAAAATGTGGGTGGTTCCTATTATCAAAATGGTTTTATTGGTGAAGCACGTATTTACAATAGAGCACTAAGCTCCACAGAAGTATCCCAAAACTTCAATGCCACCCGTAGTAAGTATGGTGTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
00636d5b97ca0a1bdcf7be49d788d3f7a0eae6f272b408fc421ae72cf0e258f1
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7139
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H9-2 from the Yellow Sea, China Jiang,T. and Luo,L. 2019-04-04 — GenBank