Protein

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Genbank accession
XMR01803.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSVFSNLEGTMQPSFILGKKGALISFSDDSISIKDSFGEKFLPVKVGSAVDADSAVNVKYLEDHPTVMFGEAIPSDDIGKNNYTYFQTNSEGIVDIFLKIDGKWVKSLYVNKDILSSVNGGDYIGLITGGTLQQAQFYVTPEEFGAAGDGETDDTAAVNACAVYAKENKIQVQGKGNYRIKTALYLEDITWFGGTITGNGGTMISVINCHIQFATLTGCYLKFFGGDGKFYFNKFINITSTAAFLMQGMTQTGTIDFCFNEMTLCKYGVLQQGTGEKMTVGRYSYNHIHDIYGDAIELNVINSHYPDGFVIEGNIIENVDGTNAPIPLSNWGIGIGVAGSGPYDVDAPDSQYVKNFVIKNNRVYNVRQCIHVEVGKDFKILDNEVYPSSLVSTGTGLTTCGVITYGSKDFIVDGLTGHLLNDASVTTRMVSINWGVTSGKFAGPPRNFKLSNLYIPESTILVYTSCSDNWTNNTELSNVTCTKIQWRGLPSASKFSDIRTKELDVIGQHLSTEGEGGGLYTRSKYTYTNWTNCVVQDDCNISKYSFAKMYVDRIDQSSNNFKVPTDIDGTGHRGPVLIPVVEQYYVPYDTFPGGRYFPQGTIIHNQSGSKYIVTVGGSFFGKYDTIRQTVVGQTYIEALGVSWGDNQYAKAAGTQILITGAGANGEDLLTYITRAVYVVSNAYRVDIADPIVTATAAGALLKAAQPITYITLS
Physico‐chemical
properties
protein length:713 AA
molecular weight: 77652,44450 Da
isoelectric point:5,10553
aromaticity:0,11360
hydropathy:-0,10589

Domains

Domains [InterPro]
DC_0530
ATT
1–131
DC_0530 IPR011050
DC_2190
STR
119–442
DC_2190
IPR012334
STR
142–502
IPR012334
DC_0045
RBD
432–713
DC_0045
XMR01803.1
1 713
Architecture
ATT
STR
RBD
ATT 1-131 | STR 132-502 | RBD 503-713
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR01803.1
1 713
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9797
Central domain 155 579 426 0,9905
C-terminal 580 713 133 0,9420
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-579
C-terminal
580-713

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey5
[NCBI] 		3375711 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR01803.1 [NCBI]
Genbank nucleotide accession
PQ471516 [NCBI]
CDS location
range 155411 -> 157552
strand -
CDS
ATGTCAGTTTTTTCTAATTTAGAAGGAACCATGCAGCCCTCATTCATCCTTGGTAAAAAAGGAGCCTTGATTAGTTTTTCAGATGATTCCATTTCAATAAAGGATTCATTTGGTGAAAAATTTCTACCAGTTAAAGTAGGGTCTGCGGTTGATGCCGATTCTGCTGTCAATGTTAAGTATCTAGAAGATCACCCAACCGTAATGTTTGGTGAAGCCATCCCTTCAGATGATATCGGTAAAAATAATTATACATATTTCCAAACTAACAGTGAAGGGATTGTTGATATATTTCTAAAAATTGATGGTAAATGGGTAAAATCACTATACGTTAATAAAGATATTTTGTCAAGTGTTAACGGAGGAGATTATATTGGATTGATAACAGGAGGAACACTTCAACAAGCACAGTTCTATGTAACTCCAGAAGAGTTTGGGGCAGCAGGTGATGGTGAAACAGATGACACTGCGGCAGTAAATGCCTGTGCAGTATATGCAAAAGAGAATAAAATTCAAGTTCAAGGTAAAGGTAATTATAGAATTAAAACAGCCTTATACTTGGAAGATATAACTTGGTTTGGTGGAACAATAACAGGTAACGGCGGTACTATGATTTCTGTAATCAACTGCCATATACAATTTGCTACATTAACTGGTTGTTATCTTAAATTCTTTGGTGGTGATGGTAAATTTTATTTTAATAAATTTATAAACATTACCAGTACTGCTGCGTTTTTAATGCAAGGTATGACTCAAACTGGCACTATTGATTTCTGCTTTAATGAAATGACTCTTTGTAAGTATGGAGTTCTTCAACAAGGCACGGGTGAAAAAATGACAGTAGGGCGTTATTCTTATAACCATATTCACGATATCTATGGGGATGCAATCGAACTAAACGTTATCAACTCTCATTATCCTGATGGTTTTGTAATTGAAGGAAATATTATTGAAAACGTTGACGGTACTAATGCACCAATCCCATTATCAAACTGGGGTATAGGAATTGGGGTAGCGGGTTCTGGTCCATATGACGTTGATGCTCCTGATTCACAATATGTTAAAAACTTTGTTATTAAAAACAATAGAGTTTATAACGTTCGTCAGTGTATTCACGTTGAAGTTGGTAAAGATTTTAAAATTTTAGATAACGAGGTATATCCATCCTCATTGGTATCGACTGGTACTGGCCTTACTACCTGTGGTGTTATCACTTATGGTTCAAAAGACTTTATTGTCGATGGTCTTACTGGACATCTATTAAATGACGCATCAGTAACTACACGTATGGTTTCTATAAACTGGGGTGTAACTTCTGGTAAATTTGCTGGACCTCCACGTAACTTTAAATTATCTAATTTGTATATTCCAGAATCAACTATTTTAGTTTATACATCTTGTTCTGATAACTGGACAAACAATACTGAATTATCAAATGTAACTTGTACTAAGATTCAATGGCGTGGTCTTCCATCAGCTTCTAAGTTTAGTGATATTCGCACTAAAGAGTTAGATGTTATTGGTCAACACTTGTCAACAGAAGGTGAAGGTGGTGGTTTGTATACCCGTTCTAAATATACATATACAAACTGGACAAACTGTGTAGTCCAAGATGATTGTAACATATCCAAATATAGTTTTGCTAAAATGTATGTGGATAGAATTGACCAATCATCTAACAACTTTAAAGTACCAACTGATATTGACGGAACTGGTCACCGTGGTCCAGTACTGATACCTGTAGTTGAACAATATTATGTTCCATATGACACGTTCCCTGGTGGTCGTTATTTCCCACAAGGTACAATTATTCACAACCAGTCAGGGAGTAAATATATTGTAACAGTTGGTGGTTCTTTCTTCGGAAAATACGACACCATACGACAAACGGTTGTAGGACAAACATATATAGAGGCGTTAGGCGTATCATGGGGTGATAACCAATATGCGAAAGCTGCTGGAACACAAATACTCATTACAGGTGCTGGGGCAAATGGTGAAGATTTATTAACATACATCACCAGAGCAGTTTACGTAGTATCAAACGCATACCGCGTTGACATTGCCGACCCAATTGTAACTGCTACAGCAGCAGGTGCATTATTAAAAGCGGCACAGCCAATAACATATATAACTCTATCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
97dad986d0743a619e9907cd403398e0ca4dc06ecdf5491c0ff4a461d7fa4446
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7147
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank