Protein

View in Explore
UniProt accession
A0A8S5QRK4 [UniProt]
Protein name
Pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MNRQYIGARYVPKFADPTEWKENTSYDPLTICTYNGSSYTSKIPVPSTVGNPTDNNKYWALTGNYNAQVEIYRQETTNLSKLLSEKTTFYTPEMFGAKGNGVTDDSNAIQTCFDKIKGTKGAILMTGTYFIASPIIISGWQIKVLGDGNIIYNGNDYAIKIHNCTESTMHFGTITSNGGGGILIYNTSENDYNQYINLYINKIKALTTCIKSETVESSWNNEIRIYNVRFSTFNYNKNGTSKGIHVVANDNTNGWRIENVGFENINYGLYSEVNAPNKYFEGELISPRMSEKFDKIIKTIGGAYIQLISENKFIRNIFFDLSSDTNGQIVGNYCNDKYGYISGIARIVKGNIVPGESIPHYKWTLPNSTEVFDLVEKTNNGIVTDFIIQNAITYTIK
Physico‐chemical
properties
protein length:397 AA
molecular weight: 44596,50770 Da
isoelectric point:6,46273
aromaticity:0,12343
hydropathy:-0,39748

Domains

Domains [InterPro]
IPR012334
STR
68–300
IPR012334
DC_2190
STR
69–395
DC_2190
IPR011050
STR
86–341
IPR011050
IPR024535
ENZ
95–271
IPR024535
A0A8S5QRK4
1 397
Architecture
STR
STR 68-395 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5QRK4
1 397
Domain Start End Length (AA) Confidence
N-terminal 1 105 105 0,9844
Central domain 106 355 251 0,9809
C-terminal 356 397 41 0,7870
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-105
Central
106-355
C-terminal
356-397

Taxonomy

  Name Taxonomy ID Lineage
Phage Podoviridae sp. ct3lO13
[NCBI] 		2826538 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAE21704.1 [NCBI]
Genbank nucleotide accession
BK015715 [NCBI]
CDS location
range 1 -> 1192
strand -
CDS
ATGAACAGACAGTATATCGGAGCAAGATACGTACCTAAATTTGCGGATCCTACAGAGTGGAAAGAAAACACAAGTTATGACCCATTAACAATTTGCACTTATAACGGAAGTAGTTACACGTCAAAAATTCCTGTTCCATCTACGGTTGGAAACCCAACTGATAACAATAAATACTGGGCGTTAACTGGAAACTATAATGCTCAAGTAGAAATCTATAGACAAGAAACCACTAATTTAAGTAAGCTTTTATCAGAGAAAACAACGTTTTATACCCCTGAGATGTTTGGTGCAAAAGGCAACGGTGTTACTGATGATAGTAACGCTATTCAGACTTGCTTTGATAAAATCAAAGGTACTAAAGGCGCTATTCTTATGACTGGTACTTACTTTATTGCAAGCCCTATTATTATTAGTGGTTGGCAAATTAAAGTACTAGGTGATGGAAATATTATATATAATGGAAATGACTATGCTATTAAAATTCATAATTGTACTGAAAGTACAATGCATTTTGGTACTATTACTTCTAATGGTGGCGGTGGTATTCTTATATATAATACGTCAGAAAATGACTATAATCAATATATAAATTTATATATAAATAAGATTAAAGCACTAACTACATGTATTAAATCTGAAACAGTTGAATCAAGTTGGAATAATGAAATAAGAATTTATAATGTTCGTTTTTCAACATTTAATTATAATAAGAATGGTACTAGCAAGGGTATTCATGTGGTTGCTAATGACAACACTAATGGATGGAGAATTGAAAATGTTGGGTTTGAAAATATTAACTATGGTTTATATAGCGAAGTAAATGCACCTAATAAATATTTTGAGGGAGAACTTATTAGTCCAAGAATGTCAGAAAAGTTTGATAAAATTATTAAAACAATTGGCGGTGCTTATATTCAGCTAATTTCAGAAAATAAATTTATTAGAAATATTTTTTTCGATTTATCTAGTGACACAAACGGACAAATTGTTGGTAATTATTGCAATGACAAATATGGTTATATATCGGGTATTGCTAGAATAGTTAAAGGTAATATTGTACCGGGGGAAAGTATACCACATTACAAGTGGACACTTCCTAATTCAACAGAAGTATTTGACTTAGTAGAAAAAACTAATAATGGAATTGTAACTGATTTTATCATTCAAAACGCTATCACATACACTATAAAAT

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
c49fdc99a365d194069aafc6128e711028cc203d09e9ce6485ad5732df3d0d6d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8458
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50