Protein

View in Explore
Genbank accession
WPK34197.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATLKQIQFKRSKTAGARPAASVLAEGELAINLKDRVLFTKDDQGNIIDLSFAKGGSIDGNVIHTGNYNQTGDYTLNGTFTQTGNFNLTGIARVTRDIIAAGQIMTEGGELITKSSGTAHVRFHDSADRERGIIFSPANDGLTTQVLNIRVQDYKAGSESTFAFNGNGLFSSPEVFGWKSVSTPVIYTNKVITNKKVKGDYDIYSLADNTPLTESETAINHLRVMRNAVGSGIFHEVKDNDGISWYAGDGLDAYLWSFTWSGGLKAGHSISVGTPGGNKGYSELGTASISLGDNDTGFKWHQDGYFHTVNNGTRTFIYGPAETQSLRKMVMGYSPDGVLMTTPPTENYALATVVTYHDNNAVGDGQTLLGYYQGGAYHHYFRGKGTTNINTAGGLLVTPANIDVIGGLINIDGRSNASTLLFSSYTSGQSSVDNMNIRVWGDTFTTVGGTRKNVMEISDATSWMQYIQRTTAGKVESVLNGTQIVNENLTVVKNATFDGTISAAGEIATNAVNGLRIWNNDYAAIFRRSEGSLHIIPTAFGEGKNGDIGPLRPFSLALDTGKVTIPDLQSSYNTFAANGYIKFTGHGAGAGGYAIQYSQAAPIFQEIDDDAVSKYYPIVKQKFLQGKAVWSLGTEINSGTFVLHHLKEDGTQAHTSRFNADGTVNFPDNVQVGGGEATIAKNGNIFSDIWKTFTSAGDVTNIRDAIATRVAKEGDTMTGRLTLKTNSDAVVIDYPADEAGYVKGKKGGVDNWYVGNGGADNGLAFWSFQSQGGININPNGEVILAPQGVAIVNINRDRIHMNGSNWIAHKSGAWGDQWGLEAPYFLDFGSVGEDSYYPIIKGRSVITGQGYTTSVDLGIRRTPQQWGQAIIRVGNAERADGPVGIFEFHSSGLFYSPTMVQTPAIGVGTVNGLGAPSIAIGDNDTGLSHGGDGRVNMVANGMHIASWSSSYHIHEGLWDTTGALWTETGRAIISFGHLVQQSDAYSTFVRDVYVRSDIRVKKDLVKFENASEKLSKINGYTYMQKRGTDEEGNQKWEPNAGLIAQEVQAILPELVEGDPDGEALLRLNYNGVIGLNTAAINEHTAEIAELKSEIEELKKLVKSLLK
Physico‐chemical
properties
protein length:1106 AA
molecular weight: 119037,99490 Da
isoelectric point:5,62327
aromaticity:0,09313
hydropathy:-0,28734

Domains

Domains [InterPro]
DC_0538
STR
1–692
DC_0538 G3DSA:6.20.80.10 IPR030392
DC_0339
STR
621–1029
DC_0339 Coil
IPR030392
CHP
996–1055
IPR030392
DC_0247
RBD
998–1106
DC_0247
WPK34197.1
1 1106
Architecture
STR
RBD
STR 1-1029 | RBD 1030-1106
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK34197.1
1 1106
Domain Start End Length (AA) Confidence
N-terminal 1 214 214 0,2655
Central domain 215 415 202 0,3771
C-terminal 416 1106 690 0,7386
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-214
Central
215-415
C-terminal
416-1106

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV111
[NCBI] 		3077256 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK34197.1 [NCBI]
Genbank nucleotide accession
OR352941.1 [NCBI]
CDS location
range 58986 -> 62306
strand +
CDS
ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAACTGCAGGAGCACGTCCTGCCGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGACCGTGTACTTTTTACTAAAGATGACCAAGGAAATATTATTGATCTGAGTTTTGCTAAAGGCGGTAGTATTGACGGGAATGTTATTCATACAGGTAATTATAACCAAACCGGCGATTATACTTTAAATGGCACCTTCACTCAGACAGGTAATTTTAATTTAACTGGTATTGCTCGAGTAACTCGTGATATTATTGCCGCTGGGCAGATTATGACTGAAGGCGGTGAACTTATTACAAAAAGTTCAGGTACAGCACATGTTCGTTTTCATGATTCAGCTGACCGTGAACGTGGAATCATTTTTTCTCCTGCTAATGACGGATTAACTACACAAGTTCTTAATATTAGAGTTCAAGATTACAAAGCCGGTTCAGAAAGCACTTTCGCTTTTAATGGAAATGGTTTGTTTTCTTCACCAGAAGTTTTTGGGTGGAAATCTGTATCAACTCCGGTAATTTATACCAATAAAGTTATTACTAATAAAAAGGTTAAAGGTGATTATGACATCTATTCGTTGGCTGACAACACTCCTTTAACCGAAAGCGAAACAGCAATTAATCATCTTCGTGTCATGCGTAATGCAGTTGGTTCGGGTATTTTCCATGAAGTTAAAGATAATGACGGTATCTCATGGTACGCTGGTGATGGGCTTGACGCATATCTTTGGTCGTTTACCTGGTCCGGTGGATTGAAAGCAGGCCATTCTATTTCTGTTGGTACTCCTGGTGGCAATAAAGGATACTCTGAATTAGGGACTGCTTCAATTTCTCTTGGTGATAATGATACTGGATTTAAATGGCATCAGGATGGATATTTCCATACAGTAAACAACGGAACAAGAACTTTCATTTACGGTCCTGCGGAAACACAAAGCCTTAGAAAAATGGTTATGGGTTATTCTCCGGATGGTGTTCTTATGACAACGCCACCGACAGAAAACTATGCCCTGGCAACTGTAGTTACTTACCACGATAATAACGCGGTTGGAGATGGTCAAACTCTTTTAGGATATTATCAAGGTGGAGCATACCACCACTATTTTCGTGGTAAAGGCACTACAAACATTAACACCGCGGGTGGTTTGTTAGTTACTCCAGCCAATATCGACGTGATTGGCGGTTTAATTAATATCGACGGTCGCAGTAATGCTTCAACCTTACTGTTTAGTAGCTATACGTCCGGTCAAAGCTCTGTCGATAATATGAATATACGCGTTTGGGGCGATACTTTTACTACTGTAGGTGGTACTCGCAAAAACGTAATGGAAATATCTGATGCCACTAGCTGGATGCAATATATTCAACGAACAACTGCAGGTAAAGTCGAATCGGTTCTAAACGGCACCCAGATTGTTAATGAAAACTTGACCGTAGTAAAAAATGCTACATTTGATGGTACAATCAGCGCAGCAGGTGAAATCGCAACAAATGCAGTAAATGGTCTTCGTATTTGGAACAACGATTACGCCGCTATTTTCCGTCGTTCAGAAGGAAGTCTTCATATTATTCCAACTGCCTTTGGCGAAGGCAAAAATGGTGATATCGGCCCACTTCGTCCATTTAGTTTGGCTTTAGATACTGGTAAAGTTACTATTCCAGATTTACAATCAAGTTACAATACGTTCGCAGCAAACGGATATATTAAATTTACCGGTCACGGCGCTGGTGCAGGTGGTTATGCTATTCAGTATTCGCAAGCAGCTCCTATTTTCCAGGAAATTGATGATGACGCAGTAAGTAAATATTATCCTATTGTTAAACAAAAATTCTTACAAGGAAAGGCTGTTTGGTCTTTAGGTACTGAAATTAATTCTGGTACTTTTGTTTTGCATCATTTAAAAGAAGATGGAACTCAAGCTCATACCTCAAGATTTAATGCCGATGGTACAGTTAACTTCCCGGATAACGTCCAAGTTGGTGGTGGTGAAGCTACTATTGCTAAAAATGGCAATATTTTCTCTGATATTTGGAAAACATTTACTTCAGCTGGCGATGTAACTAATATTCGAGACGCTATTGCTACCCGTGTTGCCAAAGAAGGTGATACGATGACCGGCCGCTTAACCCTTAAAACCAACTCAGATGCTGTTGTTATCGATTATCCGGCAGATGAAGCGGGTTATGTTAAGGGTAAAAAAGGTGGTGTTGATAACTGGTATGTAGGTAATGGTGGTGCTGATAACGGTTTAGCTTTCTGGAGCTTCCAATCCCAAGGTGGTATTAATATCAACCCGAACGGTGAAGTTATTCTGGCGCCGCAAGGTGTTGCAATAGTCAATATAAACCGCGACCGTATTCATATGAATGGTTCCAACTGGATTGCACATAAATCTGGTGCATGGGGTGACCAATGGGGCTTAGAAGCACCTTATTTCCTTGATTTTGGTAGCGTTGGTGAAGATAGTTATTATCCTATTATTAAAGGCCGTTCTGTAATTACCGGTCAAGGATATACTACTTCTGTTGACCTTGGTATTAGACGTACACCCCAACAATGGGGACAAGCTATAATTCGAGTAGGTAATGCTGAACGAGCTGACGGCCCTGTAGGTATTTTTGAATTCCATTCGTCTGGACTATTCTATAGCCCTACTATGGTTCAAACTCCGGCAATTGGTGTTGGTACTGTTAACGGATTAGGTGCTCCGAGTATTGCAATCGGTGATAATGACACTGGCTTATCACATGGCGGTGATGGTCGAGTTAATATGGTTGCTAACGGGATGCATATTGCATCTTGGTCTAGCTCTTACCATATCCATGAAGGTCTTTGGGATACCACTGGTGCTTTGTGGACCGAAACAGGAAGAGCTATTATTTCTTTTGGTCATTTAGTCCAACAGAGTGATGCCTATTCCACATTTGTTCGAGATGTTTATGTCCGTTCTGATATTCGTGTTAAAAAAGACCTTGTTAAATTTGAAAATGCTTCTGAGAAGCTTTCTAAAATTAACGGTTACACTTATATGCAGAAACGTGGAACTGACGAAGAAGGTAATCAGAAATGGGAACCTAACGCTGGTTTGATAGCTCAAGAAGTTCAAGCTATTTTACCGGAATTAGTTGAAGGCGACCCTGATGGTGAAGCTTTACTTCGTTTGAACTATAACGGTGTAATTGGTTTAAATACAGCTGCAATCAATGAACATACTGCAGAAATTGCAGAACTTAAGTCAGAGATTGAAGAGCTTAAAAAATTAGTTAAATCATTGTTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d701ee0632909c975e68a3a87b1c439183ec5a2e4ac4c62a90e868b41f3bacff
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5467
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank