Protein

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Genbank accession
WGM49821.1 [GenBank]
Protein name
regulator of chromosome condensation
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFVRMFDYGNITPGPKNIIKVGASTQGQFLLTDSHDLYYIGRNQGGESGNGNTNTVSSWRLVSTEVTNFFAGDRTVVVIKSDNTIWTAGETYWFSSSTGTSYSTVLVDRTAWFTSVLSVNEIADIVCSYGLIFVLSTSSVLYGAGANGYRGALGIGSSSIYTLTQCATNVRKVMTNSNDSMYITLDNKLYSSGWNDRGQHGTGNRTQINTWGLRSTGVIDAAIGGNAFNYYNGTSYFVCGQTPNFLSSDTTTFRAVPVSSLPNSSPLFMTNSPALNTATQIIITSTYQKGVGANRGLGLNNSQTGAIYSATNLQLPVSVSEISDVLFSDGLTSILTKDGDVYSTGSYYAIPGASEDVAVFTKIDLPK
Physico‐chemical
properties
protein length:369 AA
molecular weight: 39488,43290 Da
isoelectric point:5,38603
aromaticity:0,10840
hydropathy:-0,06450

Domains

Domains [InterPro]
DC_0918
STR
3–78
DC_0918 DC_0436
IPR009091
STR
9–266
IPR009091
IPR009091
STR
15–350
IPR009091
IPR051553
Unmapped
18–208
IPR051553
DC_0918
STR
70–222
DC_0918
WGM49821.1
1 369
Architecture
STR
RBD
STR 3-350 | RBD 351-369
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WGM49821.1
1 369
Domain Start End Length (AA) Confidence
N-terminal 1 114 114 0,1524
Central domain 115 358 245 0,7822
C-terminal 359 369 10 0,3910
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-114
Central
115-358
C-terminal
359-369

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_Ec-M-J
[NCBI] 		3038267 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WGM49821.1 [NCBI]
Genbank nucleotide accession
OQ718158 [NCBI]
CDS location
range 343644 -> 344753
strand -
CDS
ATGTTACCTTTTGTAAGAATGTTTGATTATGGGAATATCACACCTGGTCCTAAAAATATAATAAAAGTTGGTGCGTCTACACAGGGTCAATTCTTATTGACTGATTCACATGATTTATATTACATAGGTAGAAATCAAGGTGGTGAATCTGGAAATGGTAATACCAACACTGTATCTTCATGGAGATTAGTGAGTACAGAAGTTACTAATTTTTTTGCTGGTGATCGTACAGTTGTTGTTATTAAGAGTGACAATACTATATGGACTGCTGGTGAGACTTATTGGTTTTCGTCTTCTACTGGGACTTCTTACAGTACTGTATTAGTTGATAGGACTGCGTGGTTTACGAGTGTACTATCGGTAAATGAAATTGCTGATATAGTATGTTCGTATGGTTTAATATTTGTACTTAGCACTAGTTCAGTACTCTATGGTGCAGGGGCTAATGGATATCGTGGTGCTTTAGGTATTGGTTCATCATCAATTTACACATTAACTCAATGTGCTACTAATGTGCGTAAAGTAATGACGAATTCAAATGACAGTATGTATATTACATTAGATAATAAGTTATATAGTTCTGGGTGGAATGACAGGGGTCAGCATGGCACGGGGAACCGAACACAAATTAACACGTGGGGATTACGTAGTACTGGAGTAATAGATGCAGCTATAGGTGGTAATGCATTTAATTACTATAATGGTACATCATATTTCGTATGTGGTCAAACGCCAAACTTTCTTAGTTCAGATACAACTACATTTCGTGCAGTTCCTGTAAGTTCTTTGCCTAATAGTTCTCCGTTGTTTATGACGAATTCACCTGCATTAAATACTGCTACACAAATTATAATTACTAGTACATATCAGAAGGGTGTTGGGGCGAACCGTGGTTTGGGATTAAACAATTCTCAAACTGGTGCAATATATAGTGCTACTAATTTACAATTACCTGTTTCAGTTAGTGAGATTAGTGATGTTCTTTTTAGTGATGGTTTAACTTCAATATTAACAAAAGACGGAGATGTATATAGTACTGGTTCTTATTACGCCATCCCAGGGGCAAGCGAGGATGTTGCAGTCTTTACTAAAATTGATTTACCAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c13379996577d1136d91f3c3d8d52874a4dd269509c67a26d04084fa4ea82b33
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8672
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel E. coli Jumbo phage vB_Ec-M-J Kusradze,I., Rigvava,S., Karumidze,N., Goderdzishvili,M., Lossouarn,J. and Petit,M.A. 2016-10-04 — GenBank