Protein

View in Explore
Genbank accession
AMB18668.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGNLFRDNLYSEFPDPNKKIEELGKNQTYTKYFVNAIEAGAKGDGTDETTLLQQALDSVPSGGEFHFPSTYAFNFTSLTLRKSDVKITGKGKLTGTIVVDAPLVVSEMIFDMSGLLFDNVDLTRNAIEVKRARRGSIKGCTFKNCDKTIFANPPSGAADHSIGQVIIDANHFFGVNYAFYVSKGGNTSWMITNDCHFTNNIINVAKKSHVYCESIDGLVVDGNTCFFPNYASQDQVKEFNIYIGGQSDWVIIVNNNLFEAGKDAIKLVNPKRFTIGNNLIAWCGQRDLSDGINISGTSSHKGTIANNTITYPTKHGVTIDQNGEVTFNGNNIEYSATPPSYYGATAMSSITHYALYVTDTNPQSKKVETRGNIYQGLEIYNKGLTPYRFAGIRERKFFKSITAANTPICTLGSDNGDTAQYDGQAIVRASNTDSLTGNTASYILHIGKHIINSHVNKISEGGLTAGSSANHPSFTFSIDTTNNQLLATPVGSTSGTFYFYVTVLHNLTMM
Physico‐chemical
properties
protein length:510 AA
molecular weight: 55684,65510 Da
isoelectric point:6,49797
aromaticity:0,10392
hydropathy:-0,27059

Domains

Domains [InterPro]
IPR012334
STR
30–484
IPR012334
IPR011050
STR
32–377
IPR011050
IPR012334
STR
34–484
IPR012334
IPR006626
Unmapped
132–153
IPR006626 IPR006626 IPR006626 IPR039448
IPR006626
Unmapped
248–269
IPR006626 IPR006626 IPR006626 IPR006626
AMB18668.1
1 510
Architecture
STR
STR 30-484 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMB18668.1
1 510
Domain Start End Length (AA) Confidence
N-terminal 1 49 49 0,9664
Central domain 50 390 342 0,9815
C-terminal 391 510 119 0,9880
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-49
Central
50-390
C-terminal
391-510

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage Eldridge
[NCBI] 		1776293 Uroviricota > Caudoviricetes > Herelleviridae > Eldridgevirus > Eldridgevirus eldridge
Host Bacillus megaterium
[NCBI] 		1404 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMB18668.1 [NCBI]
Genbank nucleotide accession
KU253712 [NCBI]
CDS location
range 75483 -> 77015
strand +
CDS
ATGGGTAATTTATTTAGAGATAATTTATATAGTGAATTTCCTGATCCGAATAAGAAGATTGAGGAGTTAGGAAAAAATCAAACATACACTAAGTATTTTGTAAACGCAATAGAGGCTGGTGCAAAAGGAGACGGTACAGATGAAACAACCCTCTTACAGCAAGCACTTGATTCGGTACCTAGCGGTGGTGAGTTTCATTTCCCTTCTACTTACGCATTCAACTTCACTTCACTAACACTACGTAAGTCGGATGTAAAGATTACAGGGAAAGGGAAGTTAACAGGTACTATCGTAGTAGATGCACCACTGGTTGTTTCTGAAATGATATTTGATATGTCCGGTTTACTATTCGACAATGTAGACTTAACTAGAAACGCTATCGAGGTTAAACGAGCAAGACGCGGTTCTATCAAGGGATGCACCTTCAAAAATTGCGACAAGACTATATTTGCTAATCCTCCTAGCGGGGCTGCGGATCATTCGATCGGGCAGGTTATCATTGATGCAAACCATTTCTTTGGAGTAAACTATGCTTTTTACGTATCAAAAGGCGGAAACACCTCTTGGATGATTACAAACGACTGCCACTTTACAAACAATATTATAAATGTCGCTAAAAAAAGCCATGTTTACTGTGAATCAATAGATGGTCTTGTAGTAGACGGGAATACTTGTTTCTTCCCTAACTACGCCAGTCAAGATCAGGTGAAGGAGTTTAATATTTACATCGGCGGTCAATCAGACTGGGTTATCATCGTGAACAATAACTTATTTGAAGCTGGTAAAGACGCTATCAAATTAGTAAACCCTAAACGCTTCACCATCGGTAATAACTTAATCGCATGGTGTGGTCAACGTGATCTATCTGACGGTATCAACATAAGTGGTACCAGCTCTCATAAAGGTACAATAGCTAATAACACTATCACTTACCCTACAAAACACGGTGTAACTATCGATCAAAACGGGGAAGTTACTTTTAACGGTAACAATATCGAGTACAGTGCAACACCACCGAGTTATTACGGGGCAACTGCTATGTCTTCTATCACTCATTACGCCCTATATGTAACGGATACAAATCCGCAGTCTAAGAAAGTAGAAACACGCGGAAATATATATCAAGGGCTAGAAATCTATAACAAAGGTTTAACACCTTATCGTTTTGCGGGAATCAGAGAAAGAAAATTTTTCAAAAGCATCACGGCAGCAAATACACCTATTTGTACACTAGGTTCAGATAACGGTGATACTGCACAATACGATGGTCAAGCTATTGTAAGAGCAAGTAATACTGATTCATTGACAGGTAATACAGCTTCCTACATTCTTCATATTGGAAAACATATTATTAACAGTCATGTTAATAAAATTTCTGAAGGCGGGTTAACAGCAGGCAGTAGCGCAAACCACCCTAGCTTTACATTTTCTATAGACACAACAAACAATCAATTACTAGCTACCCCGGTAGGTAGTACGTCAGGTACTTTCTATTTTTATGTAACGGTTCTACACAATCTAACTATGATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2148b7a41200dd1fb700ab38c8b998ebcc0780f849b14e4f2b1cbc2c8c7d304b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7901
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Bacillus megaterium Bacteriophage Eldridge Reveille,A.M., Eldridge,K.A. and Temple,L.M. 2016 27103735 GenBank