Protein

View in Explore
Genbank accession
AAX46828.1 [GenBank]
Protein name
fiber
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,82
Protein sequence
MSLTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKSLQRAFLEVARFSYRVGLSNDEFDAFSIMLYPAEYVVDNRPGDVLYTNVAPIDANSNLDLTSPNNVLYKYNSVEGGIIVPRGCSVVGTDLRRTKIIPKYVPYPTTYPAQGINTEAQVPPRTAIFKVTGGTYFWQFSFFDGAEEGVYFKPDSVTTLAPKFSHHRLTCFEFADGLNPLSTLIANGTVPNADYSAVSNILARTDLEIYYQKVSKAFATIPDTSGDPSTDQIQARVEENRIVGPISDEYRVLQITRNGQTATAVTVDEFDDPRDHGFSVGVNINVSGVTGSTGSQSEADAGLYNGSFTVTSASGNVFTYQMQGEPTGNAVGSNIAVKTEIDTVDSASPYAFNLSLRSVWGMNGMHANGAKATGFKSMVVAQFTGLSLQKDDRAFVRYNASTGNYDVATAGDGAHLDGFAEYRKGWGHEHIKCSNDSFIQAVSVFAVGYQGHFTALSGGDMSITNSNSNFGNTALRSAGFKAKAFSKDKAGALTHIIPPKALNVISTTATGASGTNTITLANDGSVNGVIQGMTITGTNIGVGATVGNINVSTRVLTLTASNTGAVNGNVIFGEETSINWVNIDIQRTKTINASLAGQGGTPGTRLYLYGYTVEASPPTTRVQGFAVGARQDGTGASAIADKINCLLVAQGATDASVQSASISPYGPSVSGLAAGVVGSPLQYDANTYTISGVAGSVGGWYLSVSSVNNEIYTTLSTNTTYNTVNFTPTTFLKRIPDPRDLQDRTYRVRYVIDKDKTNPLPRDPLSGYVMQPLNSDTTSFNLQRCFYIYDIEVVQPFVRGTDDGIYYITLLCGSISPTTSNFDDRKFSQNVNEVYPTFDRDNPIADPAAATSVADNVTIGLVNATDGASPPVKDPKLSITKESTVFLLTDTGWTQPGTTPNYDSVNKRLSNVELTARAGDEEVRKINIRENNDGTVAPINVEFRRHSILRSGNHTFEYLGFGPGNYSTAFPQTQVETLTQEQIRFSQSIKEEGGVSFYSGLNSNGDLFIGNQVINPVTGQITNEDVAQLNVVGEESTTIETFSELVLTDKITVIGGASNQLESIFAGPVTFQGQSTFTNNISAKKLTYFNQDGTVIKQTLLAPENASGLPDFSNITGYDTPADGDIVYNINWTPGKSLGWIYYGGAFKEFGLTDTGDINISTTGNGHIGLGEAPDTTYRVRINGSVRIDGDVVGTGRGVVGSDKYITKSYTGDGNTLTFAVTTYGGGIKHSDDSLLVFLNGVAQIAGTNYTVDTNGANVVFSSGDAPLSTDTVHILELPI
Physico‐chemical
properties
protein length:1318 AA
molecular weight: 141001,52930 Da
isoelectric point:4,90324
aromaticity:0,09256
hydropathy:-0,21275

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAX46828.1
1 1318
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,9553
Central domain 83 311 230 0,9678
C-terminal 312 1318 1006 0,1060
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-311
C-terminal
312-1318

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM4
[NCBI] 		268747 Uroviricota > Caudoviricetes > Pantevenvirales > Ronodorvirus > Ronodorvirus ssm4
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAX46828.1 [NCBI]
Genbank nucleotide accession
AY940168 [NCBI]
CDS location
range 23611 -> 27567
strand +
CDS
ATGTCACTAACGAGACTCAAGAATATTATTACGTCCAGAACTGGACGTATCATATATGTCAACCCAGACGATTTCGATGCATCTGATGCGATTGACAACAGGGGTAACTCTGCATTGCGTCCGTTTAAAAGTTTACAGAGAGCATTTTTAGAAGTAGCAAGATTTTCATATAGAGTTGGTTTAAGTAATGACGAGTTTGATGCTTTTAGTATCATGCTCTACCCTGCTGAGTATGTCGTAGACAATAGACCAGGCGATGTTTTATATACAAACGTTGCACCTATTGATGCAAACTCAAACCTAGACTTAACTTCTCCTAACAATGTTCTCTACAAATATAACTCAGTCGAAGGTGGTATTATTGTACCTAGAGGTTGTTCTGTTGTTGGTACAGACCTCAGAAGAACTAAAATAATTCCAAAATACGTTCCATATCCCACTACATATCCAGCTCAAGGTATTAATACGGAAGCTCAGGTTCCACCAAGAACAGCAATCTTCAAAGTCACTGGTGGTACATACTTCTGGCAGTTCTCGTTCTTCGATGGAGCAGAGGAGGGAGTATATTTCAAACCTGATTCAGTCACAACTTTAGCACCTAAGTTTTCTCACCATAGACTTACATGTTTTGAGTTTGCTGATGGTCTTAATCCTTTATCAACTCTTATTGCAAACGGTACAGTTCCTAACGCTGACTACTCTGCAGTATCAAATATTCTAGCAAGAACTGACTTAGAGATATATTATCAGAAAGTATCTAAAGCATTTGCTACAATACCTGATACATCTGGTGATCCTTCAACTGACCAAATACAGGCAAGGGTTGAGGAAAACAGAATCGTTGGTCCTATATCTGATGAATACAGAGTATTACAGATCACACGTAATGGTCAGACTGCAACAGCAGTCACAGTTGATGAATTTGATGATCCTAGAGATCATGGCTTCTCTGTTGGTGTAAACATCAACGTTAGTGGTGTCACTGGTTCGACTGGATCACAGTCTGAAGCAGACGCAGGTTTATATAATGGTTCATTTACTGTCACATCTGCATCTGGAAACGTATTCACCTATCAAATGCAGGGAGAACCAACTGGTAATGCTGTAGGTTCAAACATTGCAGTTAAAACTGAGATTGATACTGTTGACTCTGCATCACCATACGCATTTAACCTATCACTAAGAAGTGTATGGGGTATGAATGGTATGCATGCAAACGGTGCAAAGGCAACTGGTTTCAAATCAATGGTTGTGGCACAGTTTACTGGATTATCACTACAGAAAGATGACAGAGCATTTGTAAGATATAATGCATCAACTGGAAACTATGATGTAGCAACAGCAGGAGATGGTGCACACTTAGATGGTTTCGCTGAGTATAGAAAGGGATGGGGTCATGAACACATCAAGTGTAGTAATGATTCATTCATACAGGCAGTTTCTGTGTTCGCTGTGGGATATCAAGGTCACTTTACTGCATTAAGTGGTGGTGATATGTCAATCACCAACTCTAACTCTAACTTTGGTAATACTGCATTGAGATCAGCAGGATTCAAAGCAAAAGCATTCTCTAAAGATAAGGCAGGTGCATTAACACATATAATACCACCTAAAGCTTTAAATGTTATCTCTACAACTGCTACTGGTGCTAGTGGAACAAATACAATTACGTTAGCAAATGATGGTAGTGTAAATGGTGTCATACAAGGTATGACTATCACAGGAACTAATATTGGAGTAGGAGCGACAGTCGGAAATATAAACGTAAGCACAAGAGTATTGACACTTACAGCTTCAAATACTGGTGCTGTAAATGGAAACGTAATCTTTGGTGAAGAGACATCAATTAACTGGGTTAACATTGACATCCAGAGAACTAAAACTATCAACGCATCACTTGCAGGACAGGGTGGTACACCAGGTACAAGGTTATATCTATATGGTTATACTGTAGAAGCATCTCCACCAACAACAAGAGTACAGGGTTTTGCAGTAGGAGCAAGACAAGATGGTACAGGTGCAAGTGCAATAGCAGATAAAATAAACTGTTTACTTGTAGCACAGGGTGCAACTGATGCAAGTGTACAATCTGCAAGCATATCACCTTATGGTCCTAGTGTTTCTGGTTTGGCAGCAGGTGTTGTTGGATCTCCATTACAATATGATGCTAATACATATACAATTAGCGGTGTAGCAGGATCAGTCGGTGGATGGTATCTATCAGTCAGTTCAGTAAATAATGAAATCTATACAACTTTATCTACTAACACAACATATAACACAGTTAACTTCACACCAACTACATTCCTCAAGAGAATACCTGACCCAAGAGACTTACAAGATAGAACATATCGTGTAAGATATGTAATTGATAAAGATAAGACCAATCCATTACCAAGAGATCCCCTCTCTGGTTATGTTATGCAACCATTGAATAGTGATACTACATCATTTAATTTACAAAGATGTTTCTACATCTATGACATTGAGGTTGTACAACCATTTGTAAGAGGTACTGACGATGGTATCTACTACATAACTCTCTTATGTGGATCTATATCACCTACAACTTCTAACTTTGATGATAGGAAGTTCTCTCAAAATGTCAATGAAGTTTATCCTACATTTGACAGAGATAATCCAATCGCTGATCCTGCTGCTGCAACATCAGTTGCAGATAATGTCACCATTGGTCTTGTTAATGCAACAGATGGTGCATCGCCACCTGTTAAAGATCCAAAGTTATCTATTACAAAGGAATCAACAGTATTCTTACTAACAGATACAGGATGGACACAACCAGGTACTACACCTAACTATGACTCAGTTAATAAAAGATTATCTAACGTAGAGTTAACTGCACGAGCAGGAGACGAAGAAGTAAGAAAGATTAATATACGAGAAAATAATGATGGTACAGTAGCACCAATTAACGTAGAGTTTAGACGACACTCTATCCTAAGATCAGGAAACCATACGTTTGAATACCTTGGTTTTGGTCCAGGTAACTACAGTACAGCGTTCCCTCAGACACAGGTAGAAACTCTAACTCAAGAGCAAATTAGATTCTCACAGTCAATTAAAGAAGAGGGAGGAGTTTCATTCTACTCAGGATTGAACTCAAATGGTGATCTATTCATTGGTAATCAGGTTATCAACCCAGTCACAGGTCAGATCACTAACGAAGATGTTGCACAGTTAAACGTTGTTGGTGAAGAGAGCACAACCATTGAAACATTCTCTGAGTTGGTTCTAACGGACAAGATAACTGTTATTGGTGGAGCATCAAACCAGTTAGAATCTATCTTTGCAGGTCCTGTCACATTCCAAGGACAGAGTACATTTACTAATAATATATCTGCTAAGAAACTTACATACTTTAACCAAGATGGTACTGTTATTAAACAGACTTTACTAGCACCAGAAAATGCAAGTGGACTACCAGATTTCTCTAATATCACAGGATATGATACACCTGCTGATGGAGATATAGTTTACAATATCAACTGGACACCAGGTAAATCACTAGGTTGGATATACTATGGTGGTGCATTTAAAGAGTTTGGACTGACAGACACAGGAGATATTAACATATCTACCACAGGTAATGGACATATAGGTTTAGGAGAAGCACCTGATACAACTTACAGAGTCAGAATTAATGGTTCAGTTAGAATTGACGGAGACGTTGTTGGTACTGGTAGAGGTGTTGTTGGATCAGATAAATATATTACTAAATCTTATACAGGGGATGGTAATACATTAACCTTCGCAGTCACAACATATGGTGGAGGCATCAAACACTCTGATGATTCACTCTTAGTATTCCTCAATGGTGTAGCACAGATTGCAGGAACTAACTACACAGTGGATACAAATGGTGCTAACGTTGTATTCTCATCTGGGGATGCACCTCTATCAACGGACACAGTTCACATCTTAGAATTACCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c203b8aa3146d06eee42f0698aa6cf6b31695bab4e5f8c92a144d8e8f664790f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3695
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50