Protein

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Genbank accession
WBY52763.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MATLKQIQFKRSKIAGARPAASVLAEGELAINLKDRTIFTKDDSGNIIDLSISAGGNISGNITQTGDYLQNGTYNLNGNQFVYAGKYIEFLPKTAGNGAWANQHKNKAPIFTDLSSTTSTSEYHPLIKQRYKDGTFSVGTLVNEGSFKIQYINESGDSKYWTFNRNGSFIVDNGSIEVRAGNISASGNINSATGFVSAPRVNTKNINLSSKTFIPNNDTGYDIVSLPTWIYNPPADGSDRDTNGLNYMRKMRASNTSSIFHEIVDCRSGKPQEISWWTGVGPSSFQWAFDTSGRITAGKSISVGLPDNGTNGRYPLESAISIGIAIGDNDTGIKWVRDGVYDLMANGISSATILNNGINSTKKLMVGYSRDSGSTWDFPNNNQAMFTARTDIDGNNNNGDGQTHIGYSSNSKMYHYFRGTGRMSVNMGDGLLVEPGILDIKTGSNRVAIRADGTFDSTQRISMRTGLFLSGDDNTNALSFKAPTGVDGTKTINWDAGTRNGQNKNTVTIKAWGNSFNSTPGNRETVFEVSDSQGYYFYAQRTNPASGQTVGPVNFKFNGTVETGHIVGLGNISASGTGSFGGNVTMSNGLFVQGGSSITGQVKIGGTADALRIWNAEYGAIFRRSESNLYIIPTPKGAGESGGISNLRPLIIELNTGTVKMSHDVHLGDSGSGTGLLQVSNSLKTIKMICPVTINERNAALTLDSPSSSSANYLQGSKAGIRSWYVGLGGAGSDLSLYSQSYGHGLVISDNFVSISKPLKVGNAQLGTDGNITNGSGNFANLNTTLDRKVTTGWINYSVDSGWYKLATVTMPQGVATVQFKITGGSGFNVGTFRQATINEIVLRSGNNSPKGINGVLWQRETDAIKDIAYINTSGDEYDVYINCGTYLNRLTLEYSTSENASVVVHGLYGPTQSPVEELPVDTVKGRVFKLLNNSSGVFDAGSSNISTNATFVANTTIGFRHKSNGDESGSAAALFYNDGTTFHILLTDKNTDTDKTKASGSYNSLRPFSINIDSGKVTISNSMSVSGVSEFYNGLNIKNNGSINFDKSGANPRNMRIFHAGDASRGNRIEIADETNYIAYFEKTPGGANRFVVNNATVAGINQTNSFGININNALGGNSIAFGDNDTGIKQSADGVLDIITNAARRMRFQTGDTYSDMNINAPNVYIRSDIRLKSNFRPIENALEKVEQLDGLIYDKADYIGGEIVQTEAGIVAQTLQDVLPEAVREVEDIKGNKILTVSSQSQIALLVEAVKTLSSRVKELESKLM
Physico‐chemical
properties
protein length:1268 AA
molecular weight: 135973,22150 Da
isoelectric point:6,92290
aromaticity:0,08438
hydropathy:-0,35276

Domains

Domains [InterPro]
DC_1954
STR
1–1267
DC_1954
IPR048390
ATT
512–652
IPR048390 G3DSA:6.20.80.10 IPR030392
IPR048388
ATT
701–773
IPR048388 IPR030392 Coil
WBY52763.1
1 1268
Architecture
STR
ATT
STR
ATT
STR
STR 1-511 | ATT 512-652 | STR 653-700 | ATT 701-773 | STR 774-1267 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBY52763.1
1 1268
Domain Start End Length (AA) Confidence
N-terminal 1 959 959 0,0378
Central domain 960 1158 200 0,2314
C-terminal 1159 1268 109 0,9952
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-959
Central
960-1158
C-terminal
1159-1268

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage REP1
[NCBI] 		3022451 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBY52763.1 [NCBI]
Genbank nucleotide accession
OQ174500 [NCBI]
CDS location
range 159598 -> 163404
strand -
CDS
ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAATCGCAGGTGCACGTCCTGCTGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGATAGAACAATTTTTACTAAAGATGATTCAGGAAATATCATTGACTTAAGCATTTCCGCTGGCGGTAATATCAGTGGAAATATCACTCAAACTGGTGATTATTTACAAAATGGAACATATAATCTTAATGGAAACCAGTTTGTTTATGCAGGAAAATATATTGAATTTTTACCTAAAACTGCTGGTAATGGTGCTTGGGCAAACCAACATAAAAATAAAGCTCCTATCTTTACCGATTTGAGTTCAACTACTTCTACTTCAGAATACCATCCGCTAATTAAACAACGCTATAAAGATGGAACTTTTTCTGTTGGTACGTTAGTAAATGAAGGAAGTTTTAAAATTCAATATATCAATGAATCTGGTGATTCAAAATATTGGACTTTTAATCGAAACGGTAGTTTTATTGTAGATAATGGCAGTATTGAAGTCCGTGCAGGTAATATTTCGGCTTCAGGTAATATTAACTCGGCAACTGGATTTGTTTCTGCACCGCGCGTCAATACAAAAAATATTAACCTGAGTTCTAAAACCTTTATACCGAATAATGACACGGGTTATGACATTGTTTCTTTACCTACTTGGATTTATAATCCACCAGCAGATGGTTCTGACCGTGATACAAACGGATTGAACTACATGCGTAAAATGCGGGCTTCAAATACTTCTAGCATTTTCCATGAAATAGTTGACTGTCGTTCGGGAAAGCCGCAAGAAATTTCTTGGTGGACCGGCGTAGGACCTTCGTCTTTCCAGTGGGCGTTTGATACCTCTGGACGTATTACCGCAGGTAAATCTATTTCAGTAGGTCTTCCTGATAATGGTACAAATGGGCGTTATCCTTTAGAGTCTGCCATTTCCATTGGTATTGCAATTGGCGATAACGATACTGGTATTAAATGGGTCCGTGATGGCGTTTATGACCTGATGGCTAACGGTATTTCATCCGCTACCATTTTGAATAATGGTATTAATAGTACTAAAAAATTGATGGTTGGTTATAGTCGAGATTCCGGTTCTACTTGGGATTTCCCAAATAACAACCAAGCAATGTTTACTGCACGCACCGATATTGATGGTAATAATAATAACGGCGACGGTCAGACTCATATCGGTTATAGCAGTAATTCTAAAATGTATCACTATTTCCGTGGCACGGGTCGTATGTCTGTTAACATGGGCGATGGACTTCTTGTTGAGCCAGGTATTTTAGATATTAAAACTGGGTCTAATAGAGTTGCTATTAGAGCAGATGGTACATTTGACTCAACCCAACGTATTTCAATGCGTACCGGGTTATTTTTATCAGGTGATGACAATACCAATGCTTTGTCATTTAAAGCGCCTACAGGTGTTGACGGAACAAAAACCATTAACTGGGATGCAGGCACTCGTAATGGTCAGAATAAAAATACTGTAACCATTAAAGCATGGGGTAACTCATTTAACTCAACTCCAGGTAATAGAGAAACTGTATTCGAAGTTTCAGATTCACAAGGTTATTATTTCTACGCTCAACGTACTAATCCTGCGTCAGGTCAAACAGTAGGTCCGGTTAACTTTAAATTTAACGGAACTGTCGAAACTGGACATATTGTCGGGCTCGGAAATATAAGTGCCTCTGGTACAGGTTCTTTTGGTGGCAATGTTACCATGTCTAATGGTTTGTTTGTCCAAGGTGGTTCTTCTATTACTGGACAGGTAAAAATTGGTGGAACAGCTGATGCATTAAGAATTTGGAATGCTGAATATGGTGCTATTTTCCGCCGTTCGGAAAGTAATCTTTATATTATCCCGACTCCTAAAGGTGCCGGAGAATCAGGCGGTATAAGTAATCTTAGACCATTGATAATAGAACTGAACACCGGCACAGTTAAAATGTCGCATGATGTTCATTTAGGAGATTCTGGATCTGGTACAGGATTATTACAAGTAAGTAATAGTCTTAAAACTATTAAAATGATATGTCCAGTAACTATTAATGAACGTAATGCAGCGCTTACTCTAGATTCTCCTTCATCTTCTTCTGCTAATTATTTACAAGGTTCTAAAGCTGGAATTAGATCGTGGTATGTTGGTCTTGGTGGCGCTGGAAGTGATTTATCGCTTTATAGTCAATCTTATGGACACGGTCTTGTTATAAGCGATAATTTCGTGTCAATCAGTAAACCTCTTAAAGTCGGAAATGCCCAACTAGGAACTGACGGTAATATTACCAACGGTTCTGGTAATTTTGCTAACTTAAACACTACTTTAGACCGTAAAGTAACTACCGGCTGGATTAATTATTCTGTCGATAGCGGTTGGTATAAATTGGCAACAGTAACTATGCCTCAAGGTGTGGCTACAGTTCAATTTAAAATTACTGGTGGTTCTGGATTTAACGTTGGTACTTTTAGACAAGCAACAATTAATGAAATTGTATTGCGTTCAGGTAATAACAGCCCTAAAGGAATTAATGGTGTTTTATGGCAACGCGAAACAGATGCTATTAAAGATATTGCGTATATTAATACCTCAGGCGATGAGTATGATGTTTATATTAATTGTGGCACTTATTTAAATAGACTTACATTAGAATATAGCACTTCAGAAAACGCTTCAGTAGTAGTTCATGGATTATATGGGCCTACACAATCACCAGTAGAAGAGCTTCCTGTAGATACTGTTAAAGGTCGTGTTTTTAAACTTCTTAATAATAGCTCAGGCGTTTTTGATGCAGGTAGTTCTAATATTTCTACAAATGCAACTTTTGTGGCAAATACTACTATAGGATTCCGTCACAAATCTAACGGCGACGAAAGTGGCTCTGCAGCTGCTCTGTTTTATAATGATGGTACTACGTTCCATATATTATTAACAGATAAAAATACCGATACTGATAAAACTAAAGCCTCCGGTTCTTATAATAGCTTGAGACCTTTTTCTATCAATATCGATTCAGGTAAAGTAACTATTTCAAACTCTATGAGCGTTTCTGGGGTATCAGAGTTTTATAATGGCCTTAACATCAAAAATAATGGAAGTATTAACTTTGATAAGTCTGGTGCTAACCCGAGAAATATGAGAATATTTCATGCTGGTGATGCTTCTCGCGGTAACCGCATTGAAATTGCAGATGAAACTAACTATATTGCTTACTTTGAAAAAACTCCAGGTGGAGCTAACCGCTTTGTAGTAAATAATGCTACTGTAGCTGGTATTAATCAAACAAATTCATTTGGTATTAATATCAATAACGCACTTGGTGGAAATAGTATAGCATTTGGTGATAATGATACCGGAATTAAACAATCCGCTGACGGAGTTCTTGATATCATTACTAATGCCGCACGCCGAATGAGATTCCAAACGGGTGACACTTATTCTGACATGAATATAAATGCCCCAAACGTTTATATTCGTTCTGATATTCGTTTGAAATCTAATTTCAGACCTATTGAAAATGCTCTTGAAAAGGTTGAACAGCTTGATGGTTTAATCTATGATAAAGCTGACTATATAGGCGGTGAAATTGTTCAAACTGAAGCGGGTATTGTGGCTCAAACACTGCAAGATGTTTTACCAGAAGCAGTTCGTGAAGTTGAAGATATTAAGGGTAATAAAATACTCACTGTTTCTTCTCAATCCCAGATTGCTCTTCTGGTTGAAGCTGTGAAAACACTTTCTTCTCGTGTAAAAGAACTTGAATCTAAACTTATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4b34e89a956d02262cbe8c6341cba4cb1fe5acf51cfaf8eb2897db76a55aa029
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5196
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Swapped genetic code blocks viral infections and gene transfer Nyerges,A., Vinke,S., Flynn,R., Owen,S.V., Rand,E.A., Budnik,B., Keen,E., Narasimhan,K., Marchand,J.A., Baas-Thomas,M., Liu,M., Chen,K., Chiappino-Pepe,A., Hu,F., Baym,M. and Church,G.M. 2022 — GenBank