Protein

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Genbank accession
XYL02087.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MDILSVLFSQQRRRIGIIVPSVVISEKHMDATEVTEHPVELGAPVSDHAYDRPSEVTMELGFAGGGSLIDGIDTTEIFNVSTGLSLGTSPADVYQQLLDLKKSKVPFEVTTGKRQYKNMLIRAIEVLTDKTSENVLMTTLTLRELLITETQKVTTTPAENMQSPQDTGGVSNTGLKNPTTPDKQQSILKSAGGFLGIG
Physico‐chemical
properties
protein length:198 AA
molecular weight: 21404,11460 Da
isoelectric point:5,09217
aromaticity:0,04040
hydropathy:-0,19242

Domains

Domains [InterPro]
DC_1370
STR
1–195
DC_1370
IPR048494
ATT
21–155
IPR048494
XYL02087.1
1 198
Architecture
STR
ATT
STR
STR 1-20 | ATT 21-155 | STR 156-195 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PbrM1EGY
[NCBI] 		3387282 Viruses >
Host Pectobacterium brasiliense
[NCBI] 		180957 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYL02087.1 [NCBI]
Genbank nucleotide accession
PQ676537.1 [NCBI]
CDS location
range 22510 -> 23106
strand -
CDS
ATGGATATTTTATCTGTGCTGTTCTCTCAACAGCGGCGACGGATTGGCATCATTGTGCCGAGCGTGGTGATCAGTGAAAAGCACATGGACGCGACCGAGGTCACCGAACACCCGGTGGAACTCGGCGCGCCTGTGAGTGACCACGCTTACGATCGCCCCTCAGAGGTGACAATGGAGTTGGGCTTTGCTGGTGGAGGTTCACTGATAGACGGTATTGATACGACGGAAATTTTCAACGTCAGCACCGGTTTGTCGTTAGGTACCAGTCCGGCAGATGTCTATCAGCAGTTGCTGGATCTGAAAAAGAGCAAGGTTCCTTTTGAGGTGACCACCGGCAAACGCCAGTACAAAAACATGCTGATCCGCGCTATCGAGGTGCTGACCGATAAAACCAGCGAAAACGTGTTAATGACAACTCTTACCTTGAGGGAGTTGCTTATCACCGAAACGCAGAAGGTCACCACCACACCGGCGGAGAATATGCAGTCACCGCAGGATACCGGCGGCGTGAGCAACACCGGACTGAAGAACCCCACAACACCCGATAAGCAGCAGAGCATTTTAAAGTCTGCGGGAGGTTTCCTTGGCATTGGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d01a14ba9d0d7bb0030588890ec2581bb6fcc0b4095426dfdd0ab07301838414
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7371
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel Pectobacterium brasiliense-infecting phage from Egypt with biocontrol potential against soft rot in vegetables Elhalag,K.M., Ahmad,A.A., Elsharkawy,M.M., Huang,Q. and Naser-Eldin,M.A. — — GenBank