Protein

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Genbank accession
WCD42785.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAVAGRKSGSSDQRNPVESPDSLHSKAEVRILLALGEGPWPDIPAADLPKRVLLDGTPIQNQDGTFNMEGIKLDFRPGTEDQTYIPGVPGVESETGIGVELKYGEGAAWVRQISNTQIDAVRIRIGLARLVQQLDNGDRVGAVVDYRIDLAVGGGSYATVVNGKFEGKTTTLYERDHRIDLPASSTGWRVRVVRLTPDSTTDMLVSQTQIQAITEIVDVKLTYPHTVLLFASFDAKLFSNIPPISLLSEGREVQIPTNYDPVAKTYSGTWNGEFKRAWTDNPAWVMFDAVTNERFSIGDKIPAFLMDKWQLYRIAQRCDDRIPDGAGGTEVRYKCDIYVQSRVQAWTLIRDLCAIFCGMSYWGNQMLNFISDSPSDAVQVLTNANVVNGQFVYKGGSVKNRRSVGMVSYDDPVNHYQSNVAVVPVQEMVQRYGYDQALELSGIGCTRLSEAQRKARYGVLTNAMDEQVSFVIGMEGIEFMPCDVVAIADAEFSGAQTGGRAERDSTGRTIYLDRSISDVVAIGDTIIIRAVGQKEAERRTIAAIASDRRSVTVSADIPTGIAAFTPWVIDSANLAVRMFRITSVKWNEADNTFSCSGLIYNADKYDAVDSGARLDDRPVSLIPSAIVPAPTNLAMEPYYVMNQGVRTVSISFTWDRVDKASHYEMQWRRDNNDWINVPRQTTMIYDLNGVFSGDYQFRVRAISNVGEISSGWATSSVETIEGRAGDVPAIASFTTTALVFGVRLDWSFPNDAEDTNKTEIRYSLNADGTDAMHLSDVAYPGTTYSQMGLSVGQRFYYSARLVDRQGNIGPWTAWIVGESSTDVSDISDAIFQDIQKTDGWKDLIGGMGDAATISADAMRSTIETAKALLKNTYADLAETRRWFAENGARKAEITETRLVIADEVQALALQMIELKAQIDEEVTSQITSLQQTVSTLAETTAQDITSLESRMGSAESGVSANAGAISGLTTTVTNQGGLITANSQSIAQMTVTINGFETSITDITNVTNDINGNLSAYRTLRIKANVNGVDYVAGTTTGIQNTDTGVRSYVNFLADQFAMLINVNGTPTPIFTNVGTQVILRSAVIGDATITSAKIANGAIGRLQIADSIQSNNYAQGSTGMKLDFANGTLELNGNEPGQGRKTIGNIRDVVYNENNQVVVVIGKRL
Physico‐chemical
properties
protein length:1166 AA
molecular weight: 127072,99520 Da
isoelectric point:4,83088
aromaticity:0,07719
hydropathy:-0,19511

Domains

Domains [InterPro]
DC_0014
STR
1–1166
DC_0014
IPR053171
Unmapped
3–857
IPR053171 IPR015406
IPR055385
ATT
91–218
IPR055385 IPR032876 IPR003961
IPR003961
STR
629–723
IPR003961
IPR013783
STR
629–721
IPR013783
IPR036116
STR
642–714
IPR036116
WCD42785.1
1 1166
Architecture
STR
ATT
STR
ATT
STR
STR 1-90 | ATT 91-218 | STR 219-342 | ATT 343-494 | STR 495-1166
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WCD42785.1
1 1166
Domain Start End Length (AA) Confidence
N-terminal 1 499 499 0,9472
Central domain 500 1109 611 0,0529
C-terminal 1110 1166 56 0,5190
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-499
Central
500-1109
C-terminal
1110-1166

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Ymer
[NCBI] 		3003826 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium brasiliense
[NCBI] 		180957 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WCD42785.1 [NCBI]
Genbank nucleotide accession
OP748252.2 [NCBI]
CDS location
range 18899 -> 22399
strand +
CDS
ATGGCAGTAGCGGGAAGAAAAAGCGGTTCATCAGATCAGCGTAATCCGGTTGAGTCGCCGGACAGTCTGCATTCAAAAGCGGAAGTGAGGATCCTGCTTGCGCTAGGTGAAGGGCCGTGGCCTGATATTCCCGCCGCAGACTTGCCGAAACGCGTATTGCTCGACGGCACGCCGATCCAGAATCAGGATGGCACGTTCAACATGGAAGGGATTAAGCTGGATTTTAGGCCAGGTACTGAAGACCAAACTTACATTCCTGGCGTTCCTGGCGTTGAATCTGAAACTGGTATCGGCGTAGAACTGAAATACGGCGAGGGAGCGGCGTGGGTACGTCAGATATCCAACACGCAGATCGACGCCGTCAGGATCCGCATTGGCCTTGCTCGTCTTGTACAGCAACTGGATAACGGTGACCGAGTCGGCGCGGTGGTTGATTACCGGATTGATCTGGCTGTCGGAGGCGGTTCGTATGCAACCGTTGTTAACGGCAAGTTTGAAGGTAAGACGACAACCCTTTACGAGCGCGACCATCGCATTGATTTACCTGCGTCAAGTACTGGCTGGCGCGTCAGAGTTGTGCGACTGACACCAGATTCAACCACTGACATGCTGGTTAGCCAGACACAAATTCAGGCTATCACGGAAATCGTTGATGTTAAGCTGACATATCCGCACACCGTCCTATTGTTCGCGTCATTCGATGCGAAACTATTCTCAAACATCCCTCCTATTTCTCTATTGTCAGAAGGGCGAGAGGTGCAAATACCGACGAATTACGATCCGGTTGCGAAGACGTATTCAGGGACGTGGAACGGCGAATTTAAACGTGCGTGGACTGACAATCCGGCGTGGGTGATGTTCGACGCCGTGACGAATGAACGGTTCAGTATCGGTGACAAAATACCAGCTTTCCTAATGGATAAATGGCAGTTATATCGGATTGCCCAGCGTTGCGACGACCGGATACCGGACGGCGCAGGCGGTACAGAGGTTCGCTATAAATGTGACATCTACGTGCAAAGCAGGGTGCAGGCGTGGACGCTGATCCGCGATCTTTGCGCGATATTCTGCGGCATGTCGTACTGGGGAAACCAGATGCTGAATTTTATCAGCGATTCCCCATCTGACGCCGTGCAGGTTCTGACAAACGCTAACGTGGTTAACGGTCAGTTTGTTTACAAAGGCGGAAGCGTCAAAAATCGTCGATCCGTTGGCATGGTTAGTTACGACGATCCGGTAAACCACTATCAATCAAACGTGGCTGTGGTTCCAGTGCAGGAAATGGTTCAGCGATACGGTTACGATCAGGCGCTGGAGCTATCAGGTATCGGCTGTACTCGTTTGTCAGAAGCGCAAAGGAAGGCGCGTTACGGCGTGCTAACTAATGCGATGGATGAGCAAGTTTCATTCGTCATTGGCATGGAAGGGATCGAGTTCATGCCGTGCGATGTGGTGGCTATTGCTGATGCTGAATTCAGCGGTGCGCAGACTGGTGGCCGCGCTGAGCGTGATTCAACCGGACGCACGATTTACCTTGACCGATCTATATCAGATGTCGTTGCCATTGGCGACACTATCATTATCCGTGCTGTAGGCCAGAAGGAAGCGGAGCGCAGGACTATCGCCGCCATCGCATCAGATCGCCGTAGCGTTACCGTTAGCGCAGACATCCCAACCGGAATTGCTGCATTCACCCCGTGGGTAATTGATTCGGCTAATCTGGCCGTGCGCATGTTCCGCATCACGTCAGTAAAATGGAATGAGGCTGACAATACGTTTTCATGTTCCGGTCTGATCTACAACGCGGACAAATATGACGCCGTTGATTCCGGCGCACGTCTTGATGATCGTCCGGTTTCCCTTATTCCATCTGCTATTGTGCCAGCGCCGACAAATCTTGCGATGGAACCGTATTACGTCATGAATCAGGGCGTGCGAACGGTTAGTATTTCGTTTACGTGGGATCGCGTTGACAAGGCTAGTCATTACGAAATGCAATGGCGGCGAGACAATAACGACTGGATTAACGTACCGCGCCAGACGACGATGATCTACGACTTGAACGGCGTGTTTTCCGGTGATTATCAATTCCGCGTGCGTGCGATATCCAACGTGGGTGAAATATCATCAGGATGGGCAACGTCCAGCGTTGAAACGATTGAAGGGCGTGCGGGTGATGTGCCAGCTATCGCATCATTCACAACTACTGCGCTGGTTTTCGGCGTGCGGCTGGATTGGTCATTCCCGAATGACGCAGAAGACACGAACAAAACTGAGATACGGTACTCACTGAACGCCGATGGCACCGATGCAATGCACCTTTCTGATGTGGCGTACCCTGGCACCACGTATTCACAGATGGGGCTTAGCGTAGGCCAGCGATTCTATTACAGCGCCAGATTGGTGGACAGGCAGGGGAACATCGGGCCCTGGACGGCTTGGATTGTTGGTGAATCCAGCACGGATGTATCGGATATTTCCGACGCCATATTCCAAGATATCCAGAAAACTGATGGTTGGAAAGACTTGATCGGCGGCATGGGTGACGCGGCGACAATTTCCGCTGATGCTATGCGTTCAACAATCGAAACTGCCAAGGCGCTGCTGAAGAACACTTACGCTGATCTGGCGGAAACTCGCCGATGGTTCGCTGAGAACGGCGCACGCAAGGCGGAAATCACCGAAACTCGACTCGTTATTGCTGACGAGGTGCAGGCGCTGGCATTGCAGATGATCGAGTTGAAGGCGCAGATCGATGAAGAGGTCACCAGCCAGATAACCTCCCTTCAACAAACAGTCTCAACTCTTGCCGAAACTACCGCTCAAGATATCACTTCCCTTGAGTCCCGCATGGGCTCAGCAGAATCCGGCGTTAGCGCGAACGCTGGCGCGATTTCAGGACTGACCACTACTGTGACTAATCAGGGCGGGTTAATCACCGCTAACAGCCAGTCTATCGCGCAGATGACGGTGACTATCAACGGGTTTGAAACGTCGATAACCGACATCACCAATGTCACTAACGACATTAACGGCAACCTGAGCGCTTACCGGACGCTACGCATCAAGGCCAACGTTAACGGTGTGGATTATGTCGCCGGAACGACAACGGGCATTCAGAACACGGACACGGGCGTTAGATCGTATGTTAACTTCCTTGCTGACCAGTTCGCGATGCTGATTAACGTGAATGGCACGCCGACGCCGATCTTCACCAACGTTGGCACGCAGGTAATTTTGCGTTCGGCGGTGATTGGGGATGCGACGATAACCAGTGCGAAGATTGCCAACGGTGCAATCGGGAGACTACAGATAGCCGACAGTATCCAGTCGAATAACTATGCTCAGGGTTCAACGGGTATGAAGCTTGATTTTGCCAATGGCACATTAGAGCTTAACGGTAATGAACCAGGTCAGGGAAGAAAAACGATAGGTAATATTCGCGATGTGGTATACAACGAAAATAATCAGGTAGTGGTCGTAATAGGGAAAAGATTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
58faca5fa338cc6ab8d37da96f0bcf0f21559c802a112552634a28d0eae02413
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7856
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50