Protein

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Genbank accession
AAL49570.1 [GenBank]
Protein name
unknown
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MVSTGTRRGTLRSRAPSRLHCYLKQGYLGMVAIKISAFAGEQPMLLPRLLPETGATAAMNVRLNDGGLTPINKPIEVATIATASQKTIYRHQGSWLSWPNVVNAVPGPVAQDRLYFTGDGAPKVKIGGVDYALKVPRPTGALTAALSGTGSGDIQSRTYVYTWVTSFGEESAPCPASIIVDWKPGQTVTLSGFAATPGGRSITTQRIYRSQTGKTGTGLYLIAERAASAGNFTDNIAVDQFQEPLPSADWNEPPDGLAGLAEMPNGMMAAFVGRSIYFCEPYRPHAWPEKYSRNVGSDIVGIAALGSILVVVTKGKPYLLAGTHPDSMQQQQLEENLPCINARSIVDLGHAVCYASNDGLVAVRGDGSIRLVTEQLLSREKWLDLSPFTIIGGQINGAYLLFYDNLSASGERIAGSISIYVDGQPFLVRSSEIASSSFFDIGDTALYFMAPGSKTIQRFDAPQGAPQTLYWRSKEFITTSPSSMGAVLVDSGSAISLKALEALQEERNQIIAANAALFAAGDLQGGINARPLNDRSINGDDLQPVPPPPTAADAASLTVSIFADGKLIQTIDKVDRIARVRAGLKARKWEVAISTNMQIAQVIMAASVEELKQVL
Physico‐chemical
properties
protein length:615 AA
molecular weight: 65668,01410 Da
isoelectric point:6,97314
aromaticity:0,07480
hydropathy:-0,04000

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAL49570.1
1 615
Domain Start End Length (AA) Confidence
N-terminal 1 456 456 0,8455
Central domain 457 604 149 0,1957
C-terminal 605 615 10 0,9964
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-456
Central
457-604
C-terminal
605-615

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage PBC5
[NCBI] 		179237 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti 2011
[NCBI] 		1286640 Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Rhizobiaceae > Sinorhizobium > Sinorhizobium meliloti

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAL49570.1 [NCBI]
Genbank nucleotide accession
AF448724 [NCBI]
CDS location
range 11461 -> 13308
strand +
CDS
ATGGTCTCCACTGGAACGCGCAGGGGCACATTGCGGTCAAGAGCGCCGTCGAGACTGCACTGCTACCTTAAGCAAGGATACCTTGGCATGGTTGCGATCAAGATTTCGGCCTTTGCGGGCGAGCAGCCGATGCTGCTCCCGCGGCTCCTGCCGGAGACTGGTGCGACGGCAGCGATGAACGTGCGCTTGAACGACGGCGGTCTGACGCCGATCAACAAGCCCATTGAGGTCGCAACCATTGCCACGGCCTCACAGAAGACGATCTATAGGCATCAAGGGTCATGGCTCTCATGGCCCAACGTGGTCAATGCCGTGCCCGGCCCGGTCGCGCAGGACAGACTTTACTTCACTGGTGATGGTGCCCCGAAGGTGAAGATTGGTGGCGTTGACTATGCCCTTAAGGTGCCGCGCCCAACCGGGGCATTGACAGCAGCCCTTTCCGGAACCGGATCTGGCGACATTCAAAGCCGCACGTATGTCTACACCTGGGTAACGTCTTTCGGAGAAGAGTCGGCGCCCTGCCCGGCAAGCATTATTGTTGATTGGAAGCCCGGCCAGACGGTCACGCTCTCCGGCTTTGCTGCAACACCGGGCGGACGGTCCATCACGACGCAGCGCATATACCGCAGCCAAACCGGTAAGACGGGCACCGGTCTGTACCTGATCGCGGAGCGCGCGGCCTCGGCCGGGAATTTCACCGACAACATCGCCGTAGATCAGTTTCAGGAGCCGCTACCGTCTGCGGACTGGAACGAGCCGCCGGACGGTCTCGCGGGTCTCGCAGAGATGCCGAATGGTATGATGGCGGCGTTCGTTGGGCGCTCGATCTATTTCTGCGAGCCCTACCGTCCGCATGCGTGGCCTGAGAAATACTCGCGCAACGTCGGCTCCGACATTGTCGGCATTGCCGCGCTCGGCAGCATTCTCGTGGTAGTGACGAAGGGCAAGCCTTACCTGCTCGCCGGCACCCATCCCGATTCGATGCAGCAACAGCAGCTTGAGGAAAATCTCCCCTGTATCAACGCTCGATCGATCGTCGATCTCGGTCACGCGGTCTGCTACGCGTCCAACGACGGGCTGGTGGCAGTTCGAGGCGACGGTTCGATCAGGCTGGTTACGGAACAGCTTTTGAGCCGGGAAAAGTGGCTGGACCTTTCCCCTTTCACAATCATCGGCGGGCAGATCAACGGCGCATATCTGCTCTTTTACGACAACCTTTCGGCGTCTGGCGAACGCATCGCTGGCTCGATTTCTATCTACGTCGATGGTCAGCCGTTCTTAGTGCGCTCGTCTGAAATCGCGTCATCGAGCTTCTTCGACATTGGCGACACTGCCCTCTATTTCATGGCGCCTGGCAGCAAAACCATCCAGCGTTTCGACGCGCCGCAAGGGGCTCCGCAGACGCTGTATTGGCGATCAAAGGAGTTCATCACGACTTCGCCATCGTCGATGGGCGCGGTGTTGGTCGACAGTGGTTCCGCCATCTCTCTCAAGGCGCTTGAGGCGCTGCAGGAAGAGCGAAATCAGATCATTGCAGCCAACGCTGCGCTGTTCGCGGCTGGCGATCTGCAGGGCGGCATCAACGCCCGCCCTCTCAATGATCGTTCCATCAACGGTGACGATTTGCAGCCGGTACCGCCGCCGCCGACCGCCGCCGACGCAGCCTCGCTGACGGTTAGCATCTTCGCCGACGGCAAGCTGATCCAGACCATAGACAAAGTCGATCGCATAGCGCGAGTGAGAGCTGGGCTCAAAGCTCGCAAGTGGGAAGTGGCAATCTCGACGAATATGCAGATCGCGCAGGTCATCATGGCCGCAAGCGTCGAAGAACTGAAGCAGGTGCTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
db6e0dd947cdf15a54e8f9ee5162323e6b192a361e21479a89f44bfac83a9889
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9003
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequence of the genome of Sinorhizobium meliloti bacteriophage PBC5 Schulmeister,S.A., Krol,J.E., Vorhoelter,F.-J., Skorupska,A.M. and Lotz,W. — — GenBank