Protein

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Genbank accession

YP_009788082.1 [GenBank]

Protein name

virion structural protein

RBP type

Evidence RBPdetect

Probability 0,62

Protein sequence

MANSLKQLMSLSEPELIGLGAQYGLSFHAGMKKSQMAQQLSQSAASGWMEVNKELMSESPDGTYDEMVGFHGTSDMLSDAAHAAQNIHAAGMGGAFQHYMSSGAGWQVEAIDDYLKQLGATAQDVWMHLPKEQEDSHPAAFRALSNYMRDTLVGHQDIMPEIKGHHSGDILKEYSTKLGNIQDSYEHLSHMYLDKSLYENESQYAHDISRVSARLATQMGSRYLEVAASSAMGAHVSYMSTLPAVGDPSVVGNVAHARQPLNAAGLPLGSTGSAVAGREKYSLASSLTGLPENNPAAQSVYKSIQETVHNLAQVYKGGDNASTGMNPYKHRTSEYDMIMDSATRYNDVADVRSGYANLARELADEPSYSATNIRAILDNNHDKMDAESFAPVGIANPSFSHARIAEVGTSFTANLDSPTNWNSARMRREEKAIADLDASHANFRDVADGGQRSSGTTITYHDEVEQGSPEWHAMRSKYSITGSTIGSYLGNNAYTSPIKEMSDKLGINPKPRTSNFDMERGHRLEPIARSRVGREFGFNIGESGAITNSDYPDFLYSPDGLIGDDALWEHKAPRKFFDLKEHPDYNDQMQLGMLVSNRQRTLFSQTVGNETRSQWVERDPDWFSKNESKINSTLARMDVGHEVGSDNNFKTPEEAEQAARKAMTGEGIWGFRTKNSGEGYYTGGKRGMSRFSATAGTDEDEFAGRRSAFEPTNEDNGYRPNFVMQDNTQTGLSVIGQGSGNGVAIYGQAPSESNPNSLTNSVKEGILLAQEENRQRRGFREISEEYAEDADFEEEGISRSRFDRSNGGGGRRGGGGGGGRTPNPWDEQFGGPAGGAVARGIAGGSVSSATNGLMTAMATTPWGRAAAVAAGAVQIGAELADNANESLGTAQDAGMTNPVAFASQRQGMEMLGLSENQALNVAQTTHSAYNTLLNGDSSGAVRLVQGTRGLLTISDIRETEGDPVALARIIQERGRERGWSQARVAGAMDMAGLGGMARTYQREGAVQRAAEAVRDDGAATETDDAVTNTQVLRGVVRRASPEYGIQSAYFQHGANYAALAATGVQDALNVGNGVVNAGNSVAAGVENLEGQAKEFLDHFLPTAESGNREYDKHGNRITSPTGARGKYQILPSTARDPGFGLKPSDGTPQDDERLAREYMMTLVDRYNGDYEKANAAYTDGAGTVDKAVKNYGDDWLKHVPQQAQNRVAEYRKWSKSTGAIQQGAGGFAGSPMSNPVPTVINLNVNAQVNNKQATATVVATNGQTTTQTVNMGSGAQQRR

Physico‐chemical properties

protein length:	1279 AA
molecular weight:	137623,55710 Da
isoelectric point:	5,34312
aromaticity:	0,07115
hydropathy:	-0,62877

Domains

Domains [InterPro]

DC_0169
ATT
1–422

DC_0169 IPR051703 DC_0159 G3DSA:1.10.530.10 DC_0800

IPR011604
STR
453–643

IPR011604 IPR023346

IPR011335
Unmapped
463–628

IPR011335 IPR008258

IPR019080
STR
470–598

IPR019080

YP_009788082.1

1 1279

Architecture

ATT

STR

RBD

STR

RBD

ATT 1-422 | STR 453-643 | STR 645-1078 | RBD 1099-1114 | STR 1115-1196 | RBD 1197-1279

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0169	ATT	DC_0169	1	422	Novel HMM	DC_0169	N-terminal	Low	Positional only	46 proteins / 46 hits
IPR051703	Unmapped	-	431	632	InterPro	NF-kappa-B Signaling Regulator	-	-	-	-
IPR011604	STR	IPR011604	453	643	Merged direct domain	PD-(D/E)XK endonuclease-like domain superfamily	Central	Low	Positional only	46 proteins / 46 hits
IPR011335	Unmapped	-	463	628	InterPro	Restriction endonuclease type II-like	-	-	-	-
IPR019080	STR	DC_0765	470	598	InterPro cluster	YqaJ viral recombinase	Central	Low	Positional only	44 proteins / 44 hits
DC_0159	STR	DC_0159	645	1078	Novel HMM	DC_0159	Central	Low	Positional only	48 proteins / 48 hits
G3DSA:1.10.530.10	RBD	G3DSA:1.10.530.10	1099	1221	Merged direct domain	G3DSA:1.10.530.10	C-terminal	Low	Positional only	95 proteins / 95 hits
IPR023346	STR	IPR023346	1115	1196	Merged direct domain	Lysozyme-like domain superfamily	Central	Low	Positional only	29 proteins / 29 hits
IPR008258	ENZ	DC_0010	1116	1193	InterPro cluster	Transglycosylase SLT domain 1	C-terminal	High	Text match	100 proteins / 142 hits
DC_0800	RBD	DC_0800	1221	1279	Novel HMM	DC_0800	C-terminal	Low	Positional only	42 proteins / 42 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pectobacterium phage PP101 [NCBI]	1916414	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Pectobacterium carotovorum subsp. carotovorum [NCBI]	555	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Genbank protein accession

YP_009788082.1 [NCBI]

Genbank nucleotide accession

NC_047791 [NCBI]

CDS location

range 38518 -> 42357
strand +

CDS

ATGGCAAATAGCTTAAAGCAGTTGATGAGTTTATCAGAGCCAGAGTTGATTGGTTTAGGTGCTCAATATGGTCTGTCCTTCCACGCTGGTATGAAGAAGTCGCAGATGGCTCAACAATTGAGTCAAAGTGCTGCGTCTGGTTGGATGGAAGTTAACAAAGAACTCATGTCAGAAAGTCCTGATGGAACATACGACGAAATGGTCGGGTTTCACGGCACTTCTGATATGCTGTCTGATGCTGCACACGCAGCTCAAAATATTCATGCCGCTGGAATGGGTGGAGCATTTCAACATTATATGAGTAGTGGTGCTGGTTGGCAGGTAGAAGCTATTGATGACTACCTCAAGCAACTCGGTGCCACTGCACAGGATGTTTGGATGCACTTGCCGAAAGAGCAAGAAGATTCTCACCCAGCGGCATTCCGAGCTTTGAGCAACTACATGCGGGATACTTTAGTTGGTCACCAAGACATCATGCCTGAGATTAAAGGGCATCATTCTGGTGACATCCTTAAAGAGTATTCTACAAAGCTTGGAAACATTCAGGATTCATATGAGCATCTGTCTCACATGTATCTTGACAAATCTTTGTACGAAAACGAGTCTCAATATGCGCATGACATTTCAAGAGTTTCTGCACGCTTGGCAACTCAAATGGGAAGCCGTTACTTGGAAGTTGCTGCAAGCTCTGCTATGGGTGCTCATGTATCGTATATGTCTACGTTACCTGCTGTTGGCGACCCGTCTGTTGTTGGGAATGTCGCTCATGCTCGTCAGCCTCTTAACGCTGCTGGACTTCCTCTAGGTTCAACTGGTTCTGCTGTGGCTGGTCGTGAGAAGTATTCTCTTGCATCATCTTTAACAGGTCTTCCGGAGAATAATCCTGCTGCACAATCTGTTTATAAAAGTATTCAAGAAACTGTACATAATCTTGCTCAGGTTTACAAGGGTGGGGATAATGCTTCAACAGGCATGAATCCATACAAACACCGAACTTCTGAGTATGACATGATTATGGATTCTGCAACTCGGTACAATGATGTTGCAGATGTTCGCTCTGGTTATGCCAACCTTGCAAGAGAATTGGCGGACGAACCAAGTTATTCAGCAACAAACATTCGTGCAATCTTGGATAACAACCACGACAAAATGGATGCGGAATCTTTCGCTCCTGTAGGTATTGCCAATCCGAGTTTTAGTCACGCACGTATAGCGGAAGTTGGAACCAGTTTCACAGCAAACTTGGATTCACCAACGAATTGGAATAGTGCAAGAATGCGCAGAGAGGAAAAAGCAATTGCTGACCTCGATGCATCTCATGCAAACTTCCGTGATGTTGCGGATGGCGGACAAAGAAGTTCAGGAACAACCATAACGTACCATGATGAAGTTGAGCAAGGCTCTCCAGAATGGCACGCGATGCGAAGCAAGTATTCAATTACTGGCTCAACCATTGGTTCTTATCTTGGCAACAATGCGTACACCAGTCCGATAAAGGAAATGTCCGACAAGTTAGGCATCAATCCAAAACCGCGTACATCTAATTTTGATATGGAGCGTGGTCACCGACTGGAACCTATTGCCCGCTCAAGAGTTGGTAGAGAGTTTGGATTTAACATCGGGGAATCCGGTGCAATCACGAACAGTGATTATCCTGACTTTCTGTACTCTCCTGACGGATTAATTGGGGATGATGCACTCTGGGAGCACAAAGCTCCAAGGAAGTTCTTCGACTTAAAAGAGCATCCTGATTATAACGACCAGATGCAACTTGGTATGTTGGTGTCTAATCGTCAGCGAACTCTGTTTTCGCAGACTGTTGGAAATGAAACTCGAAGCCAATGGGTTGAACGTGACCCTGACTGGTTTAGCAAAAATGAAAGCAAGATAAATTCAACTCTTGCTCGAATGGATGTTGGGCATGAAGTTGGCTCTGATAATAATTTCAAGACACCAGAAGAAGCTGAACAAGCTGCACGCAAGGCCATGACTGGTGAGGGCATTTGGGGATTCCGCACAAAGAATTCTGGCGAAGGCTATTACACTGGCGGCAAGCGCGGCATGTCTCGGTTCTCTGCAACTGCGGGAACTGATGAAGATGAGTTTGCTGGGCGTCGTTCTGCGTTTGAACCAACAAATGAAGATAACGGTTACCGTCCAAACTTCGTAATGCAAGACAACACTCAGACAGGATTGTCGGTTATTGGGCAGGGTTCAGGAAATGGTGTTGCCATTTATGGGCAAGCTCCGTCCGAAAGCAACCCAAACTCATTAACCAATTCTGTTAAAGAGGGTATTCTCCTTGCTCAAGAGGAAAACAGACAAAGACGTGGATTCCGAGAAATCAGCGAAGAGTATGCAGAAGACGCAGACTTCGAAGAAGAAGGTATCTCGCGTAGTCGTTTTGACCGTTCGAATGGTGGCGGTGGCCGTCGTGGTGGCGGTGGTGGTGGTGGAAGGACTCCAAATCCGTGGGATGAGCAATTTGGTGGCCCCGCTGGTGGAGCAGTTGCTAGAGGAATTGCTGGTGGTTCTGTAAGTTCTGCAACAAACGGACTTATGACTGCAATGGCTACAACTCCGTGGGGACGCGCTGCTGCTGTTGCTGCTGGTGCTGTTCAAATCGGTGCCGAACTTGCTGATAATGCAAATGAATCTTTGGGCACAGCTCAAGATGCAGGGATGACTAATCCAGTTGCATTTGCCAGCCAGAGGCAAGGCATGGAAATGCTTGGCCTAAGTGAAAACCAAGCATTAAATGTGGCACAAACAACCCATTCCGCATACAACACCTTGCTGAATGGCGATAGCAGCGGCGCTGTGAGGCTCGTTCAGGGAACGCGTGGGTTACTAACCATCAGTGACATACGCGAGACTGAGGGCGACCCAGTGGCTCTGGCACGTATCATCCAAGAGCGTGGGCGGGAACGTGGGTGGAGTCAGGCGCGGGTAGCTGGCGCAATGGATATGGCCGGATTGGGTGGCATGGCTCGGACGTATCAGCGGGAAGGTGCGGTACAACGCGCTGCTGAGGCCGTGCGGGACGATGGCGCTGCTACTGAAACAGATGATGCGGTAACCAATACGCAAGTGTTGCGTGGCGTGGTGCGGCGGGCTAGCCCCGAATATGGCATCCAAAGTGCCTACTTCCAACATGGTGCAAACTATGCCGCACTTGCTGCGACTGGTGTTCAGGATGCGCTGAATGTTGGTAATGGTGTTGTTAATGCTGGTAACTCTGTTGCTGCTGGTGTTGAGAATCTTGAAGGTCAAGCCAAAGAGTTTCTTGACCACTTCTTGCCAACTGCTGAATCTGGAAACCGTGAGTATGATAAACACGGCAATCGAATCACAAGCCCAACTGGTGCTCGTGGTAAATACCAGATACTTCCTTCAACAGCACGTGACCCTGGGTTTGGTTTGAAACCATCTGATGGCACTCCACAAGATGATGAGCGTCTTGCTCGTGAATATATGATGACTCTGGTTGACCGATATAATGGCGACTACGAGAAAGCCAATGCTGCATACACAGATGGTGCTGGAACAGTTGATAAAGCTGTGAAGAACTATGGTGATGATTGGCTTAAGCATGTACCACAACAGGCTCAGAATCGTGTTGCTGAGTACCGCAAGTGGAGTAAATCTACCGGTGCAATTCAACAAGGTGCTGGTGGATTTGCTGGCTCCCCAATGTCCAATCCTGTTCCGACAGTTATTAATTTAAATGTCAATGCTCAGGTAAACAACAAGCAGGCAACTGCAACTGTTGTGGCAACAAATGGACAGACCACAACCCAGACTGTGAACATGGGAAGTGGTGCGCAACAAAGACGTTAA

Genome Context

Tertiary structure

PDB ID

54763488adc89e1d3abb94dfb8b38be1645d1c7e38858f9c976f66e97eb173b6

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3422

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence