Protein

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Genbank accession
WYW04344.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSKVTGSYESIIRGVSQQVPQDRFVGQHWAQDNMVSDPVRGLARRHGSRLMGEKPMASITANAATIADLANYKEFSFTINSVDYSLMYRPVAKPSGSTMPPLICIRKSDGVILDVLTAAADTANVIAQLDGGVSAVGNVAKYLLLAPNNRAPDATVVDKVEVTGVADWSAFWIRQGAYSRTYTIKATTTAGVVYTASYTTPSSYYPGTLNTSDIPATATDYQKQVNDRVYAYQTAVNQWIGTSAAAIQPQNIALQLGDRLVAAGYSPSVGGVGVNGSHIVVTNAKAVEVDDGGDGTFMKGVAREVQSAADLCPIHATDKYVRIRPKGDSGSGVYYVKSVAKDGNNGPLGTWKEVIWTEAPGVLQTPGFVVMLGEIIGNNLYVATSQGHLANVSGDTNQTNWSASVAGDLDSQPIPSFFNKRITHISTFQDRLMLVSDSTINLSRSGDYFNFYRKSALTVADDDPVEIFALGSEGDVITDATMIDRSLILFGGQYQYAMDGRQALTPRTAFVSIQSAHEDATGCPPVAGGNYIFFSQQRNQRLTIQQMQTGDYADSFRAFDITTQLDGYLSGTPRQILSLTSPSWLVVRTKELTNGFHVFNYLDSADQSQRLVDSWSRWTFNPVLGKLVGLTTHNGNILALTLRTASDGQRLVLDQFFREADLSDYPYIDSIRDFENNASIKPGWPGEAESAVVFHAGGGDKFLLGQPLADYQKLFDAAPEVPVSYAMMGTLYESSMEPTAPYMRDSKDKAVLDSRLTLTAFQITLSESAALRAYLRGYSDPVSAESRIVDWIYRPAGTWVLNTQQVAPVVTLPVHVLREIREFRLRIASRNWLPMTLTSIEWSGQFFTQRRM
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93096,59440 Da
isoelectric point:5,59787
aromaticity:0,09624
hydropathy:-0,17089

Domains

Domains [InterPro]
IPR058003
TTP
1–52
IPR058003 IPR058003
DC_0058
STR
1–852
DC_0058
WYW04344.1
1 852
Architecture
STR
STR 1-852
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW04344.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 202 202 0,8489
Central domain 203 401 200 0,1938
C-terminal 402 852 450 0,1880
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-202
Central
203-401
C-terminal
402-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Kurepalu-1
[NCBI] 		3132680 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW04344.1 [NCBI]
Genbank nucleotide accession
PP496476 [NCBI]
CDS location
range 30845 -> 33403
strand +
CDS
ATGAGCAAAGTCACTGGCTCGTATGAGTCTATTATTCGTGGGGTCTCGCAGCAGGTGCCGCAAGACCGCTTCGTTGGCCAGCACTGGGCGCAGGACAACATGGTCAGTGACCCGGTGCGGGGTCTTGCCCGCCGCCACGGCAGCCGCCTTATGGGCGAGAAGCCTATGGCCTCAATCACAGCCAACGCCGCGACCATCGCCGACCTCGCCAACTACAAGGAGTTCAGCTTCACCATCAACTCCGTGGACTACTCGCTGATGTACCGCCCGGTGGCCAAGCCGTCTGGCTCCACCATGCCTCCCCTCATCTGCATCCGCAAGTCGGACGGGGTGATTCTGGACGTGCTGACCGCAGCGGCTGATACAGCCAACGTCATCGCACAGCTGGATGGCGGCGTCAGTGCGGTAGGCAACGTAGCCAAGTACCTGCTGTTGGCCCCGAACAATCGGGCGCCTGATGCTACTGTAGTGGACAAGGTGGAGGTCACAGGCGTGGCTGACTGGTCCGCCTTCTGGATCAGGCAGGGCGCGTACTCCCGCACCTACACCATCAAGGCCACGACCACGGCTGGGGTTGTGTACACCGCGTCCTACACCACGCCGTCCAGCTACTACCCCGGCACGCTGAACACCAGCGACATCCCGGCCACGGCCACCGACTACCAGAAGCAGGTCAACGACCGCGTCTACGCTTACCAGACCGCTGTGAACCAGTGGATCGGTACGTCTGCCGCAGCCATCCAGCCACAGAATATCGCGTTGCAGTTGGGCGACCGTCTTGTGGCCGCTGGCTACAGCCCCAGCGTAGGCGGCGTGGGCGTCAACGGTTCACACATCGTCGTCACCAACGCCAAGGCGGTTGAGGTGGATGACGGCGGCGACGGCACCTTCATGAAGGGCGTGGCCAGAGAGGTCCAGAGCGCTGCCGACCTGTGCCCAATCCACGCGACCGACAAGTACGTCCGCATCCGCCCCAAGGGCGACAGCGGCTCGGGCGTGTACTACGTCAAGTCGGTGGCGAAGGACGGCAACAACGGCCCGCTGGGTACATGGAAGGAGGTAATCTGGACAGAGGCACCGGGCGTATTGCAGACCCCAGGCTTCGTCGTGATGCTGGGCGAGATCATCGGCAACAACCTGTATGTGGCCACCAGCCAAGGCCATCTGGCCAACGTGTCTGGTGACACCAACCAGACCAACTGGTCGGCCAGCGTGGCAGGTGACTTGGACAGCCAGCCGATCCCCTCGTTCTTCAACAAGCGCATTACCCACATCAGCACGTTCCAAGACCGCCTGATGCTGGTGAGTGACTCGACCATCAACCTGTCCCGCTCCGGCGACTACTTCAACTTCTACCGCAAGTCCGCGCTTACCGTGGCGGATGACGACCCCGTGGAGATCTTCGCGCTGGGTTCCGAGGGCGACGTAATCACGGACGCGACGATGATCGACCGCTCCCTGATCTTGTTCGGCGGGCAGTACCAGTACGCAATGGACGGCAGGCAGGCGCTCACCCCGCGTACGGCTTTCGTGTCGATTCAGTCGGCACACGAGGACGCGACGGGCTGCCCTCCGGTGGCCGGTGGTAACTACATCTTCTTCTCCCAGCAGCGCAACCAGCGGCTGACGATCCAGCAGATGCAGACCGGCGACTACGCGGACAGCTTCCGTGCATTCGACATCACCACCCAGCTGGACGGCTACCTGTCGGGCACACCTCGCCAGATCCTGTCGCTGACCTCGCCCTCGTGGCTGGTGGTGCGGACCAAGGAGCTTACCAACGGCTTCCACGTCTTCAACTACCTCGACTCGGCGGACCAGTCGCAGCGCCTCGTGGACTCTTGGTCGCGGTGGACGTTCAACCCAGTGCTCGGTAAGCTCGTCGGGCTGACCACGCACAACGGGAACATCCTCGCCTTGACCCTGCGCACGGCCTCGGATGGCCAGCGGCTCGTGCTCGACCAGTTCTTCCGCGAAGCCGATCTGTCGGACTACCCGTACATCGACTCCATCCGGGACTTCGAGAACAACGCCAGCATCAAGCCGGGCTGGCCAGGAGAAGCTGAGTCTGCCGTCGTGTTCCATGCGGGCGGCGGGGATAAGTTCCTGCTGGGGCAGCCGCTGGCCGACTACCAGAAGCTGTTCGACGCCGCCCCGGAGGTGCCGGTAAGCTACGCGATGATGGGTACGCTGTACGAGAGCAGCATGGAGCCGACCGCGCCGTATATGCGGGACTCCAAGGATAAGGCAGTGCTCGATAGCCGCCTGACGCTGACCGCGTTCCAGATCACCCTGTCGGAGTCTGCCGCGCTGCGGGCGTACCTGCGAGGGTACAGCGACCCAGTAAGTGCAGAGAGCCGCATCGTGGACTGGATCTACCGCCCAGCTGGTACTTGGGTGCTCAACACGCAGCAGGTCGCACCTGTCGTAACTCTGCCGGTGCATGTGCTCCGGGAGATCCGGGAGTTCCGCTTGCGGATCGCGTCCCGAAACTGGCTGCCTATGACGCTCACCAGCATTGAGTGGTCGGGGCAGTTCTTCACCCAACGGAGGATGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
44d7ecca3c50914957ca12f38c4723e0f425348ea6e88f92a1b25cc41ee3e912
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2843
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank