Protein

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Genbank accession
YP_009795313.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MATKIIVQQIFPTDELSVSKYPKYTIQLATSLAGITVSELYEAVEDAQTAATAAEQSAQDAANSATQSANSATQSQGFAQDSLTSANNSATSATQSQGHATNAANSATSAANSATAAEQSAQDAAAELGLALRKDQNLADLPNKPASRDNLGVTALLANKADTSYVNTQLSTKTTNGQFGWGGKAVRIPDGTNLFDYFTATRASGLYWTNPTAINRPAGFTNCILYWNVIDFTNFFGVLIAAEFPNAQGRVAQISCNQGTWENAWSTGWNSKNLSPMTTDTVQAINSLKVFIRDYASFMLQSATLGGASWIEGQDNDGSTRWILGCPTQGDNTLVLRNQKANSTISLDAQSIIFPASKGFVRNARAAPGYDNITAILDSWRGEQAMGSALDNSDSRWRTFINVRHRGGNSNRENGGSDSDQWGFVLVDDNMTNNQHNFRFVKMRAGVWGAGVDIYHTGNVTVDANGFLKAASPIVKVFSNGSSEVNEESEGLETERLSTGVYRISGCLGLNSDLAWGGIEGGIVGPKCRNGLEKLWLDYDIEEDGSIILKTYHRTHPSAMEFARNEIPGVSEGDPIDIPSDSFVSLRVQMPAREEFVYTLPTSKTLHSNVYSNT
Physico‐chemical
properties
protein length:614 AA
molecular weight: 66037,98520 Da
isoelectric point:4,94189
aromaticity:0,08469
hydropathy:-0,35489

Domains

Domains [InterPro]
DC_0709
STR
1–613
DC_0709
G3DSA:6.20.80.10
STR
296–354
G3DSA:6.20.80.10 IPR058008
YP_009795313.1
1 614
Architecture
STR
STR 1-613 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009795313.1
1 614
Domain Start End Length (AA) Confidence
N-terminal 1 598 598 0,3486
Central domain 599 603 6 0,0025
C-terminal 604 614 10 0,9964
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-598
Central
599-603
C-terminal
604-614

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage DU_PP_V
[NCBI] 		2041492 Uroviricota > Caudoviricetes > Demerecviridae > Hongcheonvirus > Hongcheonvirus DUPPV
Host Pectobacterium sp.
[NCBI] 		1913084 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009795313.1 [NCBI]
Genbank nucleotide accession
NC_047887.1 [NCBI]
CDS location
range 80885 -> 82729
strand -
CDS
ATGGCAACTAAAATCATAGTACAACAGATATTTCCTACAGATGAATTATCTGTTAGCAAATACCCTAAATACACAATCCAGCTGGCAACTAGTCTAGCTGGAATTACCGTTTCAGAGCTTTATGAAGCTGTAGAGGATGCACAAACTGCCGCAACTGCTGCGGAACAATCTGCCCAAGACGCTGCTAATAGTGCTACTCAGTCTGCTAACTCGGCTACACAGTCACAGGGATTTGCTCAGGACTCTCTGACTAGTGCAAATAACTCTGCAACTAGCGCAACTCAGTCTCAAGGTCATGCTACGAATGCTGCTAATAGTGCAACATCCGCTGCTAACTCTGCAACTGCTGCGGAACAATCTGCCCAAGACGCTGCTGCGGAGTTAGGGCTAGCACTGCGTAAAGACCAAAACTTAGCAGATCTACCTAACAAACCTGCTTCTAGAGATAACTTAGGTGTTACAGCTCTTCTAGCAAATAAGGCAGATACTTCTTACGTTAATACTCAGCTGTCTACCAAAACAACTAACGGTCAGTTTGGGTGGGGTGGAAAAGCGGTTAGGATCCCTGATGGAACTAACTTGTTTGACTATTTTACAGCTACAAGAGCTAGTGGTCTATACTGGACTAACCCAACAGCTATAAATAGGCCCGCCGGTTTCACTAACTGCATCCTTTACTGGAACGTTATTGACTTCACTAATTTTTTTGGAGTTCTTATAGCTGCGGAGTTCCCTAATGCACAAGGTAGGGTTGCTCAAATTAGTTGTAACCAAGGTACCTGGGAAAACGCCTGGTCTACGGGGTGGAATAGTAAAAACCTTAGCCCAATGACAACAGATACAGTACAGGCTATAAACTCACTTAAAGTATTTATTCGTGACTACGCTAGTTTCATGCTTCAGTCTGCTACGCTAGGGGGAGCTAGCTGGATTGAGGGGCAGGACAACGACGGCTCAACTCGATGGATTTTAGGTTGCCCAACTCAAGGTGACAATACGCTAGTTCTTCGTAACCAAAAAGCTAACAGCACAATATCCTTAGACGCTCAATCCATAATCTTTCCTGCATCAAAAGGTTTTGTTAGAAATGCGAGGGCTGCTCCGGGATACGATAATATTACCGCAATACTCGACAGCTGGCGCGGTGAACAAGCTATGGGCTCAGCGCTGGACAATTCCGATAGTAGATGGCGCACGTTCATAAACGTCAGACATCGTGGAGGTAACTCAAATAGGGAAAATGGGGGGAGTGACTCAGACCAGTGGGGGTTTGTTCTAGTAGATGATAATATGACTAACAACCAACATAACTTCAGATTTGTTAAGATGAGGGCCGGAGTTTGGGGGGCGGGCGTAGACATCTACCATACAGGTAACGTTACTGTGGACGCTAACGGGTTCCTAAAAGCAGCCTCACCGATCGTAAAAGTGTTTTCCAACGGGAGTTCCGAAGTAAATGAAGAGTCTGAGGGACTGGAAACAGAGAGACTAAGTACTGGGGTATACAGAATTTCTGGCTGCCTAGGATTAAATTCTGATCTAGCATGGGGGGGTATAGAGGGAGGTATAGTTGGGCCTAAATGTCGTAATGGTCTGGAAAAACTTTGGTTAGACTACGACATAGAAGAAGATGGTTCTATTATTTTAAAGACGTATCATAGAACCCATCCTAGTGCTATGGAATTCGCCAGAAATGAAATACCTGGAGTCTCAGAAGGTGATCCTATAGATATTCCTAGTGATTCATTTGTTAGCTTGAGAGTACAGATGCCAGCTAGAGAAGAGTTTGTGTATACACTTCCTACAAGTAAAACTCTACATAGCAACGTGTACAGTAATACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f3234304eedcba6f2ad1527ee0dc184c1fde93fb8b2ceafefa8869d53e9cc7b4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7354
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage (DU_PP_V) infecting Pectobacterium spp. Park,T.-H. 2017-11-22 — GenBank