Protein

View in Explore
Genbank accession
BAF41201.1 [GenBank]
Protein name
structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MLELLISSERAEKFRERHRVIIRDSNKQWREFIINWVQDTMDGYTEIECIASYLADITTAKPYAPGKFEKKTTSEALKDVLSDTGWEVSEQTEYDGLRTTSWTSYQTRYEVLKQLCTTYKMVLDFYIELSSNTVKGRYVVLKKKNSLFKGKEIEYGKDLVGLTRKIDMSEIKTALIAVGPENDKGKRLELVVTDDEAQSQFNLPMRYIWGIYEPQSDDQNMNETRLSSLAKTELNKRKSAVMSYEITSTDLEVTYPHEIISIGDTVRVKHRDFNPPLYVEAEVIAEEYNIISENSTYTFGQPKEFKESELREEFNKRLNLIHQKLNDNISNINTIVKDVVDGELEYFERKIHKSDTPPENPVNDTLWYDTSNPDVAVLRRYWNGRWIEATPNDVEKLGGITSEKALFSELNNIFINLSIQHASLLSEATELLNSEYLVDNDLKADLQASLDAVIDVYNQIKNNLESMTPETATIGRLVDTKTLFLEYRKKLQDVYTDVEDVKIAISDRFKLLQSQYTDEKYKEALEIIATKFGLTVNEDLQLVGEPNVVKSAIEAARESTKEQLRDYVKTSDYKTDKDGIVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSDLSNNPEIKASIEQANQEAQEALKSYIDAQDDLKEKESQAYADGKISEEEQRAIQDAQAKLEEAKQNAELKARNAEKKANAYTDNKVKESTDAQRKTLTRYGSQIIQNGKEIKLRTTKEEFNASKRTLSRVLADITVNAMKGIYLRYDENGAITSHTIDKDGVKISGDKVDITANREFNVVANNINNKVGKNDIVNSLNLSNEGLDINVNRIGIKGGNANRYVQVQNDFIELGGIVQRTWKGKRSTDDIFTRLKDGHLRFRNNTAGGSLYMSHFGISTYIDGEGEDGGSSGTIQWWDKTYSDSGMNGITINSYGGVVALTSDYNRIIIDSYASANIESREAPIYLSPNTKNKPGLNRFAFTLSNADSAYETDGYIMFGSDENYKYGAGLRFSKRSNKGLVQVVNGDYATGGDTTIESGMGKFNLVKRRDGNSYVSIQSYDLLAVGSDNAGDRVASNSIYKRTYSAPANLHITSAGTIGRATSAKKYKISIENQYINEDDQFSHSKEILKLPIRTWFDKYESEIMAKELESGKKLSDDTFKLSRHTGLIAEEVEELGFNEFVIYDDNGEIEGIAYDRLWVHLIPIIKNQQSKIEKLEELINE
Physico‐chemical
properties
protein length:1224 AA
molecular weight: 138909,27840 Da
isoelectric point:5,07523
aromaticity:0,08415
hydropathy:-0,66217

Domains

Domains [InterPro]
IPR007119
Unmapped
1–300
IPR007119 Coil Coil IPR030392
DC_0109
STR
1–600
DC_0109 DC_0536
IPR010572
ENZ
57–296
IPR010572
BAF41201.1
1 1224
Architecture
STR
STR
STR 1-600 | STR 637-1224
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage phiPVL108
[NCBI] 		360398 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAF41201.1 [NCBI]
Genbank nucleotide accession
AB243556 [NCBI]
CDS location
range 33473 -> 37147
strand +
CDS
ATGCTTGAACTGCTCATATCATCAGAAAGAGCTGAAAAGTTCCGTGAACGACATCGTGTTATTATAAGGGATTCAAACAAACAATGGCGTGAATTTATTATTAACTGGGTTCAAGATACGATGGACGGCTACACAGAGATAGAATGTATAGCGTCTTATCTTGCTGATATAACAACAGCTAAACCGTATGCACCAGGAAAATTTGAGAAAAAGACAACTTCAGAAGCATTGAAAGATGTGTTGAGCGATACAGGTTGGGAAGTTTCTGAACAAACCGAATACGATGGCTTACGTACTACGTCATGGACTTCTTATCAAACTAGATATGAAGTTTTAAAGCAATTATGTACAACCTATAAAATGGTTTTAGATTTTTATATTGAGCTTAGCTCTAATACCGTCAAAGGTAGATATGTAGTACTCAAAAAGAAAAACAGCTTATTCAAAGGTAAAGAAATTGAATATGGTAAAGATTTAGTCGGGTTAACTAGGAAGATTGATATGTCAGAAATCAAAACAGCATTAATTGCTGTGGGACCTGAAAATGACAAAGGGAAGCGTTTAGAGCTAGTTGTGACAGATGACGAAGCGCAAAGTCAATTCAACCTACCTATGCGCTATATTTGGGGGATATATGAACCACAATCAGATGATCAAAATATGAATGAAACACGATTAAGTTCTTTAGCCAAAACAGAGTTAAATAAACGTAAGTCGGCAGTTATGTCATATGAGATTACTTCTACTGATTTGGAAGTTACGTATCCGCACGAGATTATATCAATTGGCGATACAGTCAGAGTAAAACATAGAGATTTTAACCCGCCATTGTATGTAGAGGCAGAAGTTATTGCTGAAGAATATAACATAATTTCAGAAAATAGCACATATACATTCGGTCAACCTAAAGAGTTCAAAGAATCAGAATTACGAGAAGAGTTTAACAAGCGATTAAACCTAATACACCAAAAATTAAACGACAATATTAGCAATATCAATACTATAGTAAAAGATGTTGTAGATGGTGAATTAGAATACTTTGAACGCAAAATTCATAAAAGTGATACACCGCCAGAAAATCCAGTCAATGATACGCTTTGGTATGATACAAGTAACCCTGATGTTGCTGTCTTGCGTAGATATTGGAATGGTCGATGGATTGAAGCAACACCAAATGATGTTGAAAAATTAGGTGGTATAACAAGCGAGAAAGCGCTATTCAGTGAATTAAACAATATTTTTATTAATTTATCTATACAACACGCTAGTCTTTTGTCAGAAGCTACAGAATTACTGAATAGCGAGTACTTAGTAGATAATGATTTGAAAGCGGACTTACAAGCAAGTTTAGACGCTGTGATTGATGTTTATAATCAAATTAAAAATAATTTAGAATCTATGACACCCGAAACTGCAACGATTGGTCGGTTGGTAGATACAAAAACTTTATTTCTTGAGTATAGAAAGAAATTACAAGATGTTTATACAGATGTAGAAGATGTCAAAATCGCCATTTCAGATAGATTTAAATTATTACAGTCACAATACACTGATGAAAAATATAAAGAAGCGTTGGAAATAATAGCAACAAAATTTGGTTTAACGGTGAATGAAGATTTGCAGTTAGTCGGAGAACCTAATGTTGTTAAATCAGCTATTGAAGCAGCTAGAGAATCCACAAAAGAACAATTACGTGACTATGTAAAAACATCGGACTATAAAACAGACAAAGACGGTATTGTTGAACGTTTAGATACTGCTGAAGCTGAGAGAACGACTTTAAAAGGTGAAATCAAAGATAAAGTTACGTTAAACGAATATCGAAACGGATTGGAAGAACAAAAACAATATACTGATGACCAGTTAAGTGATTTGTCCAATAATCCTGAGATTAAAGCAAGTATTGAACAAGCAAATCAAGAAGCGCAAGAAGCTTTAAAATCATACATTGATGCTCAAGATGATCTTAAAGAGAAGGAATCGCAAGCGTATGCTGATGGTAAAATTTCGGAAGAAGAGCAACGCGCTATACAAGATGCTCAAGCTAAACTTGAAGAGGCAAAACAAAACGCAGAACTAAAGGCTAGAAACGCTGAAAAGAAAGCTAATGCTTATACAGACAACAAGGTCAAAGAAAGCACAGATGCACAGAGGAAAACATTGACTCGCTATGGTTCTCAAATTATACAAAATGGTAAGGAAATCAAATTAAGAACTACTAAAGAAGAGTTTAATGCTTCTAAAAGAACACTATCAAGAGTGTTAGCAGACATCACTGTAAATGCTATGAAAGGCATCTATTTAAGGTATGACGAAAATGGGGCGATTACTTCACATACTATTGATAAAGATGGCGTGAAAATTAGTGGCGATAAAGTTGATATAACAGCGAATAGAGAATTTAATGTAGTCGCAAATAATATTAATAACAAAGTTGGTAAAAATGACATTGTTAATAGCCTAAACTTATCAAATGAAGGTCTTGACATCAATGTGAATAGAATTGGTATTAAAGGCGGAAATGCTAACCGTTATGTACAAGTTCAAAATGATTTTATTGAACTTGGCGGAATCGTACAACGAACTTGGAAAGGCAAACGATCAACCGATGATATATTCACACGTCTTAAAGATGGACATCTAAGGTTTAGAAATAATACCGCAGGCGGTTCACTTTATATGTCACATTTTGGTATTTCAACATATATTGATGGAGAAGGCGAAGACGGAGGTTCATCCGGTACTATTCAATGGTGGGATAAAACTTACAGTGATAGTGGTATGAATGGCATAACAATCAATTCTTATGGCGGTGTAGTCGCTTTAACATCTGACTACAACCGAATTATTATCGATTCATATGCTTCAGCTAATATTGAAAGTAGAGAAGCACCGATATATTTATCTCCGAACACCAAAAATAAACCTGGTTTAAACCGATTCGCATTCACATTATCAAACGCTGATAGTGCATACGAAACTGACGGTTATATCATGTTTGGTTCAGATGAAAACTATAAGTACGGTGCTGGATTAAGATTTTCTAAACGTAGCAATAAAGGATTGGTTCAAGTCGTTAATGGTGACTATGCTACAGGCGGAGACACTACAATTGAATCAGGTATGGGCAAATTCAACTTAGTTAAACGAAGAGATGGAAATAGTTACGTTAGCATTCAAAGTTATGATTTATTGGCGGTAGGTTCTGATAATGCTGGCGATAGAGTCGCTTCTAATTCTATTTATAAGCGTACTTATTCAGCACCTGCTAACTTACACATTACTTCTGCTGGAACAATTGGGCGTGCTACTTCTGCCAAAAAGTATAAAATTTCAATCGAAAACCAATACATCAATGAAGACGATCAGTTCAGTCATTCAAAAGAGATTTTAAAGCTTCCAATTCGTACATGGTTTGACAAATATGAATCGGAAATAATGGCTAAAGAATTGGAAAGTGGTAAAAAGTTATCTGATGATACTTTTAAACTTAGTCGACATACTGGCTTAATAGCGGAAGAGGTTGAAGAATTAGGATTTAATGAATTTGTTATTTATGATGACAACGGAGAAATCGAAGGTATCGCATACGATAGACTTTGGGTTCATTTAATACCTATTATTAAAAACCAGCAATCAAAAATCGAAAAACTGGAGGAATTAATAAATGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5103359dc1bcb166b3c774f2de66e76e9abb025c3b6c08a004bf8c5b1d56d111
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3197
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Predominance of clones carrying Panton-Valentine leukocidin genes among methicillin-resistant Staphylococcus aureus strains isolated in Japanese hospitals from 1979 to 1985 Ma,X.X., Ito,T., Chongtrakool,P. and Hiramatsu,K. 2006 17050818 GenBank