Protein

View in Explore
Genbank accession
YP_010667114.1 [GenBank]
Protein name
host specificity protein J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGSGGGGGSTPTLINDNLTSKQFYRVLDIISEGPIYGPVDQEHLSSFRLNKTPVTNSAGVVSVPGVSVAWRPGSASQLPINGFQAIEATSIVNTDVTQATPLVRTITDVDVTRVRLNLGVKSLVQQDDKGNQQNTSVTMVIETRTGNGAFNVAATVTISGKISGEYLEAHVINAPETKPFDIRVRRITPDSTTDLLNNGTIWNSYTEITDDNLSYPFTAVCGAVIDRDQYTDTPNRTYHLRGLIVDVPDNYNPITRVYTGIWTGGFKSAWTNNPAWIFRALVKNTRYGLARRAGYVDVDDGSLYVLSQFCDQEVDDGYGGKEPRFTLNAYITEQKSARELLDDIAGMFRGIALWDGMRFSIMIDRPQDPVAVVSNANVVDGLFTYSAMKRSERYNAVVVSWTDPNNGWEQVKEYYSDDELISRYEYNETTIEAFGCTSRGQALRTAKWLVESAKLEKDKVTFRMARDAIAFLPGDIIEQIDNNRAATRLGGRIVSHAGKVITVDADVSEFAGTGDSMSIMNSSGKLAKYEIASVSGRAITLKAAPAWVRDGTVFVISTGEVSSRLWRIMGISEDDNNSLYSISATLHNPNKQAIVDEGAVFEVPSDTANGYRVPNVENLKIINTNSETVQVTATWETATTTKKLVFELYVYTTEGAVVAQYETDQFRYDFYGLNAGSYTLGVRGRNENGMKGAETQVSLVIGAPSAPTFIQWTPGLFSADIVPVMNVTATTDTSFEFWYTGEVPASGAGSIEDQAQFLGRASQWTLHGLKADTTYYMYVRTKNAFGVSAFVAVSGKASSDIPGIIDIIDEAIRESEAFDRLTGQIDTSIEAILQNALNLDSSVDHQFKQVGEVRADVLTVKTTIADVDRAMAEQNTLVQAQIGNLTSSVNEKLTATVNSDGSASAFYDVGLQIKRGDQFYKAGMAMGIEPSGSSYKTTIAFNADQFGIYTGSTAGSYQLAFAALNGQVFLRSAFIQDGSIDNLKIGQFIQSNNYVAGSTGWQLNKAGTFVNYGSVAGEGKMKQDNNTISVADGNGVLRVQIGRITGVF
Physico‐chemical
properties
protein length:1048 AA
molecular weight: 113938,82050 Da
isoelectric point:4,89022
aromaticity:0,09256
hydropathy:-0,20115

Domains

Domains [InterPro]
DC_0014
STR
1–1048
DC_0014
IPR053171
Unmapped
2–852
IPR053171 IPR015406
IPR055385
ATT
87–211
IPR055385 IPR032876 IPR055383 IPR057587
IPR003961
STR
613–691
IPR003961 IPR003961
IPR036116
STR
617–790
IPR036116
YP_010667114.1
1 1048
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
STR 1-86 | ATT 87-211 | STR 212-331 | ATT 332-488 | STR 489-705 | ATT 706-809 | STR 810-1048
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010667114.1
1 1048
Domain Start End Length (AA) Confidence
N-terminal 1 491 491 0,7966
Central domain 492 985 495 0,1077
C-terminal 986 1048 62 0,8106
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-491
Central
492-985
C-terminal
986-1048

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage Midgardsormr38
[NCBI] 		2663326 Uroviricota > Caudoviricetes > Midgardsormrvirus >
Host Erwinia persicina
[NCBI] 		55211 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010667114.1 [NCBI]
Genbank nucleotide accession
NC_070949 [NCBI]
CDS location
range 19866 -> 23012
strand +
CDS
ATGGGCTCAGGTGGCGGCGGCGGTAGCACTCCTACTCTTATCAACGACAACCTCACTTCCAAGCAATTTTATCGCGTACTCGACATCATTTCTGAGGGTCCAATATACGGGCCGGTAGACCAGGAACATCTTTCATCCTTCCGATTAAATAAAACGCCTGTGACGAATTCGGCAGGCGTGGTTAGCGTTCCCGGCGTAAGCGTGGCGTGGCGCCCTGGCTCTGCCAGTCAGTTGCCGATTAACGGATTTCAGGCCATCGAAGCAACGTCCATCGTTAACACCGATGTGACACAGGCAACACCTCTTGTTCGCACCATTACTGATGTAGACGTTACGCGGGTGCGCCTGAACCTTGGCGTTAAATCTCTGGTGCAGCAGGATGACAAGGGCAACCAGCAAAACACTTCGGTGACGATGGTCATCGAAACCAGAACTGGCAATGGCGCTTTCAATGTGGCGGCCACGGTTACCATCTCCGGTAAAATATCAGGAGAGTATCTGGAAGCGCATGTGATTAATGCACCGGAGACGAAGCCATTTGATATCAGGGTTCGTCGTATCACGCCGGACAGCACCACTGACCTGCTCAACAACGGCACGATCTGGAACAGCTACACAGAAATCACTGATGACAACCTTTCGTATCCTTTTACTGCTGTTTGCGGCGCCGTAATAGACCGTGACCAGTACACTGATACCCCTAATCGCACCTACCACCTGCGCGGACTTATTGTTGATGTGCCGGATAATTACAACCCGATTACTCGCGTATATACGGGAATCTGGACGGGTGGCTTCAAGTCAGCATGGACTAATAACCCAGCCTGGATTTTCCGTGCGTTGGTGAAAAACACTCGCTACGGTCTCGCGCGCCGTGCCGGGTACGTTGATGTTGATGACGGAAGCCTTTATGTGCTGTCGCAATTTTGCGATCAGGAAGTTGATGATGGCTATGGCGGCAAAGAACCCCGCTTCACTCTCAACGCATACATCACCGAGCAAAAAAGTGCGCGTGAACTTCTGGATGATATTGCCGGGATGTTTCGTGGCATAGCGCTGTGGGATGGCATGCGCTTCTCAATCATGATTGACCGACCGCAGGATCCGGTAGCTGTAGTCTCCAATGCCAACGTTGTCGATGGCCTGTTTACCTACAGCGCCATGAAGCGCTCGGAGCGATATAACGCTGTAGTAGTTTCGTGGACCGACCCAAACAATGGTTGGGAGCAGGTCAAAGAGTACTACTCTGACGATGAGCTGATTAGCCGCTACGAATATAACGAAACCACCATCGAGGCGTTTGGCTGCACATCGCGTGGTCAGGCGCTCAGAACGGCTAAATGGCTGGTTGAGAGCGCTAAGCTGGAAAAGGACAAGGTAACATTCCGCATGGCGAGGGATGCTATCGCCTTCCTGCCTGGTGACATTATCGAGCAGATCGACAACAACAGGGCAGCGACGCGACTTGGCGGGAGGATAGTCTCTCATGCCGGGAAGGTTATAACGGTTGACGCTGATGTATCTGAGTTTGCCGGGACTGGCGACTCTATGTCGATTATGAACTCCTCCGGGAAGCTGGCGAAGTACGAGATTGCCAGCGTTTCGGGAAGAGCAATCACCCTTAAAGCCGCACCAGCATGGGTCAGAGATGGCACTGTATTCGTCATTTCTACCGGAGAGGTTTCATCCAGGCTGTGGCGCATCATGGGAATCTCTGAAGACGATAACAACTCGCTATACAGCATTTCGGCAACACTTCATAACCCAAACAAGCAGGCCATTGTTGATGAAGGCGCGGTGTTTGAGGTGCCATCTGATACGGCAAATGGCTACCGCGTACCCAATGTTGAAAACCTGAAAATCATCAACACCAATAGCGAGACGGTGCAGGTTACAGCCACATGGGAAACGGCCACGACGACTAAAAAACTGGTGTTTGAGCTTTATGTCTACACCACCGAGGGCGCTGTAGTTGCTCAGTACGAGACCGACCAGTTCCGGTATGACTTTTACGGTCTCAACGCTGGCAGTTACACGCTGGGTGTGCGCGGGCGAAATGAGAATGGAATGAAGGGAGCTGAGACTCAGGTTAGCCTGGTGATTGGCGCGCCGTCCGCACCCACCTTCATTCAGTGGACGCCCGGACTCTTCTCTGCTGACATAGTGCCGGTAATGAACGTTACAGCCACGACCGACACCTCTTTCGAGTTTTGGTACACGGGAGAGGTTCCAGCATCTGGCGCCGGAAGCATTGAAGATCAGGCGCAATTCCTAGGGAGGGCATCACAGTGGACGCTGCATGGTCTGAAGGCTGACACCACGTATTATATGTACGTCAGGACCAAGAACGCCTTTGGCGTATCTGCCTTTGTCGCAGTATCAGGCAAGGCATCATCTGATATCCCAGGGATTATAGATATCATCGACGAGGCCATCCGTGAGTCCGAGGCATTCGACCGACTTACCGGGCAAATTGATACCAGCATTGAAGCAATTCTTCAAAACGCGCTTAATCTCGACTCCAGTGTTGACCACCAGTTTAAACAAGTTGGCGAAGTAAGGGCTGACGTCCTCACTGTTAAAACCACCATCGCAGATGTCGACAGAGCGATGGCAGAGCAGAACACGCTTGTTCAGGCTCAGATAGGGAACCTCACGTCGTCAGTGAATGAGAAGCTGACGGCAACTGTGAATTCCGATGGTTCGGCATCAGCTTTCTATGATGTTGGTTTGCAAATTAAGCGGGGTGACCAGTTCTACAAGGCTGGGATGGCTATGGGTATCGAGCCATCAGGCAGCTCCTACAAAACCACCATCGCCTTCAATGCTGACCAGTTCGGGATTTACACCGGGAGCACCGCAGGTAGCTATCAGCTGGCATTTGCTGCTCTTAACGGGCAGGTATTCCTGCGCTCTGCGTTTATTCAGGATGGGTCGATAGATAACCTAAAAATCGGACAGTTTATACAGTCAAACAACTATGTTGCCGGGTCGACTGGTTGGCAGCTAAACAAGGCTGGAACATTTGTAAACTACGGCTCTGTGGCCGGGGAAGGCAAGATGAAGCAGGACAATAACACCATCAGCGTGGCTGACGGTAACGGCGTACTTCGGGTCCAGATTGGTCGCATTACGGGGGTATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4afc1359d02c77ce68e504d5eeec5349b2fbe6c522a852e7354c94a542daed3a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2860
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage Midgardsormr38 Dislers,A., Zrelovs,N. and Kazaks,A. 2020-06-19 — GenBank