Protein

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Genbank accession
YP_009817720.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSDKYLSFHSNSEYIYWRDNPVITGGDEIIITLLWKQYSTYYPENVLLAFSDSAYNVHVTNIEGNSRLAWLECPKWNATLFGLDDKRRSVKFTLPFFDEVQLELLRFGANAQNLSNFQGALFELEIKAASGDRKYLLTVDHTGKPTIVDILGTGLDGFMFNPATPMRVDIPPVNLGVGDTIEMDVMCRHIGASNHFFDTVSGTRSYFLMDSSNRWYYSTANLSLEVDGVATGDRTTASLMDRVQHVKLTVTADCNLDRIGQNLNGDANSGALISNFVITAVDGSRKYAFDKTLGNEAIVPDSFDDTVDYGAIGSAVSDDGAFIWATDQWTKSGAEEDAILKLFPVLTGEAGVVYVDGLTTSLQLIHVAADATVTVLPDGNNAMLVAQYIAPADGHIAVQTVGAGTGSITKVSHYKGGTHGIITGDGISGYAKNWTITDALFSGSVTSFTEPQVNLMRASSYLVVEEGMNEKPSVNNFKAVALVKGYRPQINLHRASSYMVVEEGMTDKTSVNNFKAVAMVAPPAVDKLYGELDHNSHTPINDYETRLRGKQLLTNSDFASGDFTDWTTVAGTVQYIATVAAAQTASPKGKGRYFMVYSGENPTNPVISQTGQFDDELIEAGETNLIELEVGYQVSTHTDTATYTSSDYGYVVLRLLDSEGNELTRYQTAPTYHLYQNQSWIPSETKFAYIKGAVAWEYIYYSVRRNTWALLTSGDLELNAKIGEVGKNKGVFLIPNGNWADGLGTDFTTLSGSPAIKTTSGYNGSNHAFGGTSSASSGQVLHDISSIASDSLERLEFSWRQSSYDNDDAAGLDIELLDIEGNILAQGTSDVIAAPKLGTWTLREINLDKLEGTSWASATHIRIQFNWQRYAGTNSDGYVDDLRLNYVS
Physico‐chemical
properties
protein length:888 AA
molecular weight: 96990,69740 Da
isoelectric point:4,71766
aromaticity:0,10248
hydropathy:-0,20968

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009817720.1
1 888
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,1945
Central domain 149 359 212 0,4992
C-terminal 360 888 528 0,5191
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-359
C-terminal
360-888

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.261.O._10N.286.51.A7
[NCBI] 		1881237 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009817720.1 [NCBI]
Genbank nucleotide accession
NC_048125 [NCBI]
CDS location
range 21201 -> 23867
strand +
CDS
ATGAGTGATAAATACCTAAGTTTTCATTCTAACAGTGAGTACATTTACTGGAGAGATAATCCCGTGATAACAGGTGGTGATGAAATCATCATCACTTTGTTATGGAAGCAGTACAGCACTTACTATCCTGAGAACGTCTTACTGGCTTTCTCAGACAGTGCCTATAACGTACACGTAACCAACATTGAAGGTAACTCTCGCCTTGCTTGGTTAGAGTGTCCGAAGTGGAATGCCACTTTGTTTGGTCTGGATGACAAGAGACGTTCTGTTAAGTTCACTCTGCCGTTCTTTGATGAGGTGCAGTTAGAGCTGTTACGTTTTGGAGCCAATGCACAGAACCTGAGTAACTTCCAAGGTGCCTTATTTGAGTTAGAAATCAAAGCAGCATCGGGTGACCGTAAGTATCTTCTCACGGTAGACCATACAGGTAAGCCTACGATTGTGGACATTCTGGGCACAGGGTTAGATGGGTTTATGTTTAACCCTGCTACCCCAATGCGAGTGGATATTCCCCCTGTTAACCTTGGGGTAGGTGACACCATTGAAATGGATGTAATGTGCCGTCACATTGGTGCCTCTAACCATTTCTTCGATACAGTAAGTGGTACCCGTTCTTACTTCCTTATGGACAGTAGTAACCGATGGTATTACAGCACAGCTAATCTCTCCCTAGAGGTAGATGGGGTAGCCACAGGGGATAGAACTACAGCATCTCTGATGGACAGAGTACAACACGTTAAGTTGACAGTAACGGCTGACTGTAACCTAGACCGAATAGGGCAGAACCTTAACGGGGATGCCAACAGTGGGGCACTGATAAGTAACTTCGTTATCACGGCTGTTGATGGCTCTCGTAAGTATGCTTTTGACAAGACCCTAGGAAATGAGGCCATTGTTCCTGACTCCTTTGATGACACTGTAGATTATGGGGCTATTGGTTCGGCTGTCAGTGATGATGGTGCCTTTATATGGGCAACTGACCAGTGGACAAAATCTGGTGCAGAAGAAGACGCAATCCTTAAACTTTTTCCTGTACTCACTGGAGAGGCAGGGGTTGTGTATGTAGATGGTCTAACTACCTCACTACAGCTTATCCATGTTGCAGCAGATGCCACAGTAACTGTGCTTCCTGACGGGAATAATGCAATGTTAGTAGCTCAGTATATTGCCCCTGCTGATGGACACATCGCAGTACAGACAGTTGGTGCAGGCACTGGCTCTATCACTAAAGTGAGCCATTACAAAGGAGGTACTCACGGCATCATTACAGGGGATGGAATTTCTGGTTACGCCAAAAATTGGACAATCACCGATGCATTATTTTCAGGAAGTGTCACTTCGTTCACAGAACCTCAGGTAAATCTGATGCGAGCATCAAGTTATCTTGTAGTAGAGGAAGGGATGAATGAGAAACCTTCTGTGAATAACTTTAAAGCTGTAGCTCTAGTGAAAGGTTATCGTCCTCAGATTAACTTACACAGAGCCTCTAGCTACATGGTTGTGGAAGAAGGGATGACCGATAAGACTTCGGTAAACAACTTCAAAGCAGTAGCGATGGTTGCCCCTCCTGCTGTGGATAAACTGTATGGGGAACTTGACCATAACTCTCACACTCCGATTAATGATTATGAAACCCGTTTGAGAGGGAAACAGTTACTAACCAATAGTGATTTTGCCTCAGGGGACTTTACTGACTGGACAACGGTTGCAGGCACTGTCCAATACATTGCCACGGTAGCAGCAGCCCAGACAGCTTCTCCGAAAGGGAAAGGTAGATATTTTATGGTTTACAGTGGAGAGAATCCTACTAACCCTGTGATAAGCCAGACAGGTCAGTTCGATGATGAACTGATTGAAGCAGGTGAAACCAATCTGATTGAGCTAGAGGTTGGTTATCAAGTAAGTACCCATACGGATACAGCCACATATACCTCCTCCGACTATGGCTACGTGGTTTTGCGGTTGTTAGATAGCGAGGGTAATGAGCTTACTAGGTATCAAACAGCCCCTACCTATCACCTATACCAGAATCAGTCATGGATACCAAGTGAGACGAAGTTCGCTTATATCAAAGGTGCAGTAGCATGGGAGTATATCTACTATTCTGTTCGCAGAAATACTTGGGCTTTACTTACTTCGGGAGACTTAGAACTTAATGCTAAGATAGGTGAAGTAGGAAAGAACAAAGGAGTTTTCCTCATACCTAATGGAAATTGGGCAGATGGACTAGGCACTGACTTTACTACTCTTTCTGGCTCTCCCGCTATCAAAACTACTAGTGGATATAACGGAAGTAACCATGCATTTGGGGGTACGTCTTCTGCATCCTCAGGGCAAGTCTTACACGACATCAGCAGTATTGCTTCTGACTCACTAGAACGTCTTGAGTTTTCATGGAGACAAAGTAGCTATGACAATGATGATGCAGCAGGACTGGATATTGAGCTACTAGATATTGAGGGTAATATTCTGGCTCAAGGTACTTCGGATGTTATCGCAGCACCTAAGCTAGGTACATGGACACTACGTGAAATTAACCTAGATAAGCTTGAAGGAACGTCATGGGCTTCTGCAACGCATATCCGTATCCAGTTTAACTGGCAACGTTATGCAGGTACGAATAGCGATGGGTACGTTGATGATTTACGCTTGAATTACGTCAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
68a22d7f7c3c4b8add4993f3634bb4c1800920f897d2de504777000d441c75f5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5922
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank