Protein

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Genbank accession
XXQ00556.1 [GenBank]
Protein name
putative central straight fiber
RBP type
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MISNNAPAKMVLNSIMTGYTMAYIQHSIYTDYDVIGRSFWLKLGKEVDRRDFTGIDTFFVMINNLTPSTTYQVQGAFYDSIIDSELLNAKIGINLSNETNFKTKEKPIIVAARSESEPVDVGVGAPIVVVETTGEASYCTIELKSTATEDSPWTKYYIGALGSTIKFGGVPIGDYKIRISGQVTMPDGVTVDSSGYYEFPNILTVAYNFVPPTAPIDIVFKAARIADGKERYDVRIEWDWERGVGANVREFLVTYINSEEYAKTGWAKAQKINVGAARAATIISFPWKVEHTFKVSSIAWGPNKQDITESAPVTFILNEDTPLDNSFVNETGIDVNYAFIKGSMKDGEIWRQTFLIDAATGAINIGLLDGEGKAPISFDPINRVVNVDGKVITRDINAANFIMTNLSGKDNPAIYTQGKSWEIITLVFGWAWIIPLPKLN
Physico‐chemical
properties
protein length:440 AA
molecular weight: 48626,67080 Da
isoelectric point:4,92899
aromaticity:0,11136
hydropathy:-0,06114

Domains

Domains [InterPro]
IPR057550
STR
10–97
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
103–197
IPR057551
XXQ00556.1
1 440
Architecture
STR
STR
STR
STR
STR 10-97 | STR 103-197 | STR 211-335 | STR 350-421 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXQ00556.1
1 440
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,8658
Central domain 142 409 269 0,2317
C-terminal 410 440 30 0,5705
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-409
C-terminal
410-440

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage MET_P1-88
[NCBI] 		3447394 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Hadar
[NCBI] 		149385 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXQ00556.1 [NCBI]
Genbank nucleotide accession
PV804860 [NCBI]
CDS location
range 88861 -> 90183
strand +
CDS
ATGATTTCTAATAATGCACCAGCCAAGATGGTCTTAAATAGTATTATGACTGGATATACCATGGCGTATATCCAGCATTCTATCTATACCGACTACGATGTTATCGGTAGATCATTCTGGCTTAAACTTGGCAAAGAAGTGGATAGAAGAGATTTCACTGGAATCGACACTTTCTTTGTTATGATCAATAACTTAACTCCCTCAACTACCTATCAGGTTCAGGGAGCTTTTTATGACTCAATTATTGACTCAGAACTTTTAAATGCAAAAATTGGTATTAACCTCTCTAATGAGACTAACTTTAAAACAAAAGAGAAGCCAATAATTGTTGCAGCAAGATCTGAGTCAGAACCTGTGGATGTTGGGGTAGGAGCACCAATAGTTGTTGTGGAAACAACTGGTGAAGCAAGCTACTGTACTATTGAGTTAAAAAGTACAGCCACTGAAGACAGTCCATGGACTAAATATTATATTGGGGCTTTAGGTTCTACTATTAAATTTGGTGGAGTTCCTATCGGAGATTATAAGATCAGAATATCTGGTCAAGTAACTATGCCTGATGGTGTTACAGTTGATTCTTCTGGGTACTATGAGTTCCCTAATATTCTAACTGTAGCTTATAATTTTGTTCCTCCTACTGCACCTATCGATATTGTTTTTAAAGCTGCACGAATTGCTGATGGTAAAGAACGATATGATGTTAGAATTGAGTGGGACTGGGAACGTGGTGTTGGTGCTAACGTTCGTGAATTCTTGGTTACTTACATAAACTCCGAGGAATACGCTAAAACCGGATGGGCTAAAGCTCAAAAGATAAACGTGGGTGCTGCCAGAGCTGCAACAATTATATCATTCCCATGGAAAGTTGAACATACTTTTAAGGTATCATCAATTGCCTGGGGACCAAACAAACAAGATATAACAGAATCAGCTCCTGTAACATTTATTCTGAATGAAGATACTCCTCTAGATAATAGTTTTGTCAATGAGACGGGTATTGATGTTAACTATGCCTTTATTAAGGGTAGTATGAAAGATGGGGAAATCTGGAGACAAACATTCCTAATTGATGCAGCTACTGGTGCTATTAACATTGGTCTGCTAGATGGAGAAGGTAAAGCACCTATTTCTTTCGACCCTATAAACCGTGTTGTTAACGTTGATGGTAAAGTAATCACTAGAGATATTAATGCTGCAAACTTTATTATGACTAACTTATCTGGTAAAGATAATCCAGCAATTTACACTCAAGGTAAATCTTGGGAGATAATAACTCTGGTATTTGGATGGGCATGGATAATACCTCTGCCAAAGCTAAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
09d4420658692a5a17c992f237ea700d7abdeb320d71073bf912a57bc2ca6cf9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8090
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50