Protein

View in Explore
Genbank accession
AUR83663.1 [GenBank]
Protein name
pectin lyase fold/virulence factor
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAVKLTDEFGNRANPSSAAYPSGSLKDETNPGVSNDGTPLSSRVGNDFQGFMQSALAEAGIDANGNPDSVDNPQILNALKKVQESHAASYTDIVYKASGGNSAVENMISGIPVAININQTCQCENGTIFKRIGNSSGTIDDYTSISGIKAQDFGADPTGAKDSTQALRDAFSAGGNIYLGSSGVYSITDQIRVPLNGNTTIFSDGAIIRYDGAQTVDNVLTLIHLTGVGTEIVETDIILDGNLSTTNFIPVGITVNGAMLWKEHSTLYNMAAGSNPVNVKRFIMNDFFYYGMKQTTLASSFGGTYGYGVVLVNVDTGTIGDGIFGTATAPIERHSVYVSSRTDGSGSCGNVVVSNVVAEQIRYEDNGISPITGFEAIFKSIDARSLKVNNTTCYGGISFIDANRRLNGLAGGYISFEGNNVRTSECSVRAFTENSPTTMWTRFYGGDGNNFTLTKPFARAMRLESVGTVIDHSTYTVVDTANPTYAYDTASVTATYPIGFLSIKGSYSGFSRLFTGGNVDLLTANCEFLNQSGNLPPFTYGAGVTVREIVLRELNTDKNYYRQSANAGWEQIEYFEDDFQSTIKCTSGAIPLWVDQQNQRVAGPLANRPYPVQAGHKYWETDQNRFVYWTGSTWWTSDVRIPRSGTTAEILALSDNTLGDGQKIYNTTTRLPYWYDDNANQWKDAAGNILS
Physico‐chemical
properties
protein length:691 AA
molecular weight: 74564,55260 Da
isoelectric point:4,79559
aromaticity:0,10275
hydropathy:-0,26860

Domains

Domains [InterPro]
DC_0060
STR
1–689
DC_0060
IPR012334
STR
128–554
IPR012334
IPR011050
STR
150–422
IPR011050
AUR83663.1
1 691
Architecture
STR
STR 1-689 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR83663.1
1 691
Domain Start End Length (AA) Confidence
N-terminal 1 162 162 0,9914
Central domain 163 552 391 0,9883
C-terminal 553 691 138 0,9118
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-162
Central
163-552
C-terminal
553-691

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.038.O._10N.286.51.C2
[NCBI] 		1881298 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio lentus
[NCBI] 		136468 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR83663.1 [NCBI]
Genbank nucleotide accession
MG592422 [NCBI]
CDS location
range 32103 -> 34178
strand +
CDS
ATGGCAGTTAAATTAACAGATGAGTTTGGCAACAGAGCTAACCCTTCAAGCGCTGCATACCCATCCGGCTCACTAAAAGATGAGACTAACCCAGGCGTATCAAATGACGGAACGCCTTTATCTTCTCGCGTTGGTAATGACTTCCAAGGATTCATGCAGTCTGCACTTGCTGAGGCTGGCATTGATGCAAACGGGAATCCTGACAGTGTTGATAACCCTCAGATTTTGAATGCACTTAAAAAAGTTCAAGAGTCACACGCAGCAAGTTACACCGACATAGTTTACAAAGCTTCAGGCGGTAATTCTGCGGTTGAGAATATGATCTCTGGGATTCCAGTTGCCATAAATATCAATCAGACTTGCCAGTGTGAAAACGGCACTATTTTCAAAAGAATAGGAAACTCATCGGGAACCATTGATGATTACACGTCTATAAGCGGTATCAAAGCCCAAGACTTCGGAGCAGATCCGACCGGTGCAAAGGATTCTACACAAGCATTACGAGATGCATTCTCAGCAGGGGGTAACATCTACCTAGGTTCCTCTGGAGTGTATTCGATTACTGACCAAATACGAGTTCCCCTAAATGGCAATACTACTATTTTCTCTGATGGCGCTATTATTCGTTATGACGGTGCGCAGACAGTAGATAACGTCCTTACTCTTATACACCTTACAGGTGTGGGAACTGAGATAGTAGAGACAGATATCATATTGGATGGTAATCTATCAACCACAAATTTTATACCTGTCGGTATAACTGTTAACGGAGCGATGTTGTGGAAAGAGCACTCCACTCTTTATAATATGGCAGCAGGTTCAAATCCCGTAAACGTTAAAAGATTCATCATGAACGATTTCTTCTACTACGGAATGAAACAAACAACATTGGCATCTTCGTTTGGTGGAACTTATGGCTATGGTGTTGTATTAGTTAATGTAGATACTGGCACTATTGGTGATGGCATATTTGGAACTGCTACCGCTCCTATTGAACGCCACTCTGTTTATGTATCATCTAGAACGGATGGTTCAGGGTCGTGTGGCAATGTTGTAGTCAGTAATGTAGTTGCCGAACAAATCCGATATGAGGATAATGGGATATCACCAATCACAGGCTTTGAAGCAATATTCAAATCCATTGACGCAAGAAGCCTTAAAGTAAATAACACAACATGTTACGGTGGCATTTCATTCATTGATGCTAATCGTAGGTTAAATGGATTGGCGGGAGGTTACATTTCGTTTGAGGGTAACAACGTCAGAACGTCTGAGTGTTCAGTTCGTGCATTTACAGAAAATAGTCCGACTACAATGTGGACGCGTTTTTATGGCGGTGACGGTAATAACTTTACTCTTACTAAACCGTTTGCTAGAGCAATGCGACTTGAATCCGTTGGTACTGTTATTGACCATAGCACCTACACCGTAGTTGATACTGCAAATCCTACATATGCATATGATACAGCAAGTGTTACTGCTACATATCCAATAGGGTTCCTTAGTATAAAAGGTTCATATAGTGGCTTCTCTCGATTGTTCACTGGTGGTAACGTAGATTTACTAACTGCTAACTGTGAGTTTTTAAACCAGTCAGGTAATCTTCCACCGTTTACATATGGTGCAGGGGTTACTGTTCGTGAGATTGTTCTACGCGAACTGAACACAGATAAGAACTATTATCGTCAATCTGCTAATGCAGGATGGGAACAGATTGAATATTTTGAGGATGATTTCCAATCGACTATAAAATGCACATCAGGAGCCATACCTCTGTGGGTTGACCAACAGAATCAGAGAGTTGCAGGCCCACTTGCGAATAGACCCTACCCAGTTCAAGCAGGACATAAGTATTGGGAAACTGACCAAAATCGTTTCGTCTATTGGACGGGCTCGACTTGGTGGACATCTGACGTTAGGATACCAAGGAGTGGAACTACTGCCGAAATACTGGCATTGTCTGATAATACACTTGGTGATGGGCAGAAGATATATAATACTACAACTAGACTTCCTTACTGGTATGATGATAATGCTAATCAGTGGAAAGATGCTGCTGGTAACATTTTAAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d4b5c268caece84218fd687e29a92965b19c2853b5bc09802f18dfc919098cac
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7310
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank