Protein

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Genbank accession
QCW20677.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MCKQQNCGCNDPCKPVICVSYVEDSCADRKLATSNTTHPTGYDNVTLITPEVNQISAYKEHLEFVNSPELLSNIPKHSVLRFSQKFLDIISNLFKGRNVGTGAKVYKGSTVLGLDTFQDFKTLKNSSSVDVNNDTNEIIFSVNENWLEAQMPIIPPPIVPDYPVIDGISVGTGVPIYDGITNKKIKISSLKSNTLNISKLLDGTVKIDSINTEFDYLKAYYINSNYVSTLLSPADGSVSRPFPTWDEARTKMIGTGTILNPENQNVTFILQTNASTALNPTINTLSIKFMNTSLTYTGNDVYMIDSEVLYPLIPKDTNNEITESITLNIFGVGSLHRTTVGGYIRSVGAKRGSSITTNNPNNIIFRIGENENDTLYLEEFVNYPNSIWEGDVLKRDGVTLLGNDYNPPIVLKWTTQVNPTNPLVYVKNNSFGSFTYPVLGKGSLHIETFVNTGLHVENTNINFNKLTILPYSYRISVVQGNAFVPSFPGVYEPKNAPAIYSKNVQWFLNSLYNINIGTFAFNGFDKFFKIEGFFTFHGSTNYHTNHYIKTFADLSTTTQNSFQINGLDKNSNLNSNINYLINSNTVGDFNLKIPSTQLNVVKNISQNVVTNVIPITNGTISSINNKPYLSGINNYVDDAGASVAGLLQNALYFNTTNNAIDKV
Physico‐chemical
properties
protein length:663 AA
molecular weight: 73376,71740 Da
isoelectric point:5,90673
aromaticity:0,10256
hydropathy:-0,20784

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCW20677.1
1 663
Domain Start End Length (AA) Confidence
N-terminal 1 258 258 0,8501
Central domain 259 468 211 0,8664
C-terminal 469 663 194 0,5269
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-258
Central
259-468
C-terminal
469-663

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage FPSV-S29
[NCBI] 		2575350 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Flavobacterium psychrophilum
[NCBI] 		96345 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCW20677.1 [NCBI]
Genbank nucleotide accession
MK764449 [NCBI]
CDS location
range 16375 -> 18366
strand +
CDS
ATGTGTAAACAACAAAATTGTGGGTGTAATGACCCATGTAAACCTGTAATATGTGTTTCTTATGTAGAAGATTCTTGTGCTGATAGAAAATTAGCTACAAGTAATACTACACATCCCACAGGTTATGATAATGTAACTTTAATAACACCAGAGGTAAATCAAATATCTGCATACAAAGAACATTTAGAATTTGTAAATTCACCTGAACTTTTAAGTAATATTCCTAAACATTCTGTATTAAGATTTTCACAAAAATTTCTTGATATTATTTCTAATTTATTTAAAGGTAGAAATGTAGGTACTGGTGCTAAGGTATATAAAGGAAGTACAGTATTAGGACTAGATACATTTCAAGATTTTAAAACTCTTAAAAATTCTAGTTCAGTAGATGTAAATAATGATACTAATGAAATAATTTTTTCTGTAAATGAGAATTGGTTAGAAGCGCAAATGCCTATTATACCACCACCTATTGTACCAGATTATCCAGTTATAGATGGTATATCTGTTGGTACAGGTGTACCAATATATGATGGAATAACTAATAAAAAAATTAAAATATCATCATTAAAATCAAATACTTTAAACATTTCTAAACTCCTTGATGGTACAGTAAAAATAGATAGTATAAATACAGAGTTTGATTATCTTAAAGCATATTACATAAATAGTAATTATGTTTCAACTTTATTATCACCTGCTGATGGTTCTGTTAGTAGACCTTTTCCAACATGGGATGAAGCTAGAACAAAAATGATTGGTACAGGTACTATTTTAAATCCTGAAAATCAAAATGTAACATTTATATTACAAACTAATGCTTCAACAGCTTTAAATCCTACTATAAATACATTAAGTATTAAGTTTATGAATACCTCATTAACTTATACAGGAAATGATGTCTATATGATAGATTCAGAAGTATTATATCCATTAATACCTAAAGATACTAACAATGAAATTACTGAATCAATTACACTCAATATTTTTGGAGTTGGTTCTTTACATAGAACTACAGTTGGTGGTTATATAAGAAGTGTTGGAGCTAAAAGAGGTTCAAGTATAACAACAAATAACCCTAATAATATTATCTTTAGAATAGGTGAAAATGAAAATGATACTTTATATTTAGAAGAGTTTGTGAATTATCCAAACTCAATATGGGAAGGAGATGTTTTAAAACGAGATGGAGTAACTTTACTTGGTAATGATTATAATCCACCAATAGTTTTAAAATGGACAACTCAAGTAAATCCTACAAACCCATTAGTATATGTTAAAAACAATAGTTTTGGTAGTTTTACTTATCCTGTGCTAGGGAAAGGTAGTTTACATATAGAAACTTTTGTAAACACTGGATTACATGTGGAAAATACAAATATAAATTTCAATAAACTGACTATACTTCCTTATTCTTATAGGATTTCTGTTGTGCAAGGTAACGCTTTTGTACCTAGTTTTCCTGGAGTATATGAACCAAAAAATGCTCCAGCTATCTATTCAAAAAATGTTCAATGGTTTTTAAACTCTTTATATAATATAAATATTGGTACTTTTGCATTTAATGGTTTTGATAAATTTTTTAAAATAGAAGGTTTTTTCACTTTTCATGGTTCAACTAATTATCATACAAATCATTATATAAAAACATTTGCTGATTTAAGTACAACCACACAAAATAGTTTTCAAATAAATGGTTTAGATAAAAATTCAAATCTTAACTCAAATATAAACTATTTAATAAATAGTAATACAGTTGGAGATTTCAATTTAAAAATACCTTCTACTCAATTGAATGTAGTAAAAAATATTAGTCAAAATGTAGTTACTAATGTTATTCCTATAACAAATGGAACAATATCTTCTATAAACAATAAACCTTATTTGTCAGGAATAAATAATTACGTAGATGATGCGGGAGCTAGCGTGGCAGGATTATTACAAAACGCTTTGTATTTTAATACAACAAATAATGCAATAGATAAAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
52d6ead66eb80efa26c9285fdefde501c96140c1a6ffa865be549e14c19508fa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3758
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Host range and genomic characterization of Flavobacterium psychrophilum phages Castillo,D. Sr., Jorgensen,J., Sundell,K. and Middelboe,M. 2014-02-21 — GenBank