Protein

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Genbank accession
YP_004323403.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
TSP
Evidence RBPdetect2
Probability 0,74
Protein sequence
MALTRLKNVFTSKTGRCLYVNSDDFDASDAFDNRGNSPNRPFKSIQRALVEAARFSYKSGQFNDTFESFSIVLYPGDYVIDNRPGTNTTGQAFTDDDILELSASSDMTLVDESGNVNPNNVLYKFNSVEGGVIVPRGTSIVGMDLRKTKLRPLYVPDPASGSIASSAVFRVTGGCYFWQFSFFDGISQGVYKDPAQPSASSPPTYSHHKLTCFEYADGKNILSSVNDTSGNALSVSDLQLYYQKVAKGWSDIPDSTSVISADELQARVEENRIVGPNTAGPKTINSIVTDFVSTNVFTTTAEVTTADAHGFSVGTPVLLEGVTGTDASRFNGSFFISAIPTPTTFRYTIKNPVTGAPSGNPTAGGSTVKVEVDNVDSSSPYIFNISLRSTWGMQGMHADGSKATGFKSMVVAQFTGVSLQKDDNAFIKWDGSAYIAGSHTDGDSIFKASYRNFHVKCSNDSVIQAVSVFAVGFADHFVAESGGDQSITNSNSNFGSCALRAKGFKTTPFTQDKAGTITHIIPPQKLARTYAAVGGYTFTLTFNNKLVQASPANNSHGIAVGDYIRFGTADHPESYLVSAVASGTGELTLNRGYRNISSAVSGASQTAYKGTVSEIPVGYVALDVQKIQDNASQGNSQWAINQSGISVGDSVINGGNSYLATSVAGSGSTAGAGSGPVHTSGAVVDNEVTWAYIGAVNTRLYLYGYTSIATKPPYKLQGFSIGARKQDKVYVSLIDGSTQSTFAALVTPDGSTSPADSKYTDITVQGYTPGDTNHPLQYDTYQQNWYLRVTAATSGDASVNGTTGYEGIHYHLGNETFYANSLFTGSSYTQRIADNRSSRDRTYRVRYTVDNSTSLSREPINGYVIQPRNVPTGQSYADVFYIYDIQVEQELKKSVQDGIYYMTVLKGSISPTNGNLTQFSFAQNINNLYPTLDKDNPTEDPNEATSIASNVTVGLVETTNAATPGVEDLSLSITKEAMGDWIIESRNQYTNASTSDAAVDGFITLEARDGEASEVDKALRMVEVNSTGGTATELRRPSILRSGNHTFEYVGFGPGNYSTGLPSVQNRVLTDAETLLAQSQKEDGGIAFYSGLNSNGDLFIGNTRISAVTGEEASLDTPSLSIVGETANLRPVFDEIIVRDKITVENTQLTSVFKGSIEVNEDAVISKNLEAADITIKGEASNNEATKKINVTLGVPSTAAAANAGDFAFEGNISAGQHLGYYWTGAAWAKFGLTDTGNLQVTGGAASGSTWTDGAGDLQLKNGLGIDIQSTGTLRVTGTGATSLGGNLTVTGTSEFNSAVNIDADFAVRTSAGVSKFTVDDATGNTGIVGTLTVNGTTQLGNDVASDLLTLNSRINTDVDPEASGTRDIGSSTLKWKDGHFSGTVDATTFTGALTGNVTANSGTSTFNNITVNGLVTGNISGNSGTATQLETARNIGGVSFNGTANIDLPGVNTGGNQNTSGTATQADNINIDETNNNASYQVTFSAQNNTGYNRQYIDSDDGHLVWNPNTWTLTGLNISATTISATTFGSLTQNCRGTRTVSTGNPAGGSDGDIWYKY
Physico‐chemical
properties
protein length:1559 AA
molecular weight: 164884,61090 Da
isoelectric point:4,81105
aromaticity:0,08852
hydropathy:-0,29185

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004323403.1
1 1559
Domain Start End Length (AA) Confidence
N-terminal 1 67 67 0,9013
Central domain 68 303 237 0,9452
C-terminal 304 1559 1255 0,4611
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-67
Central
68-303
C-terminal
304-1559

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-HM2
[NCBI] 		445696 Uroviricota > Caudoviricetes > Eurybiavirus >
Host Prochlorococcus marinus subsp. pastoris str. CCMP1986
[NCBI] 		59919 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004323403.1 [NCBI]
Genbank nucleotide accession
NC_015284.1 [NCBI]
CDS location
range 22975 -> 27654
strand +
CDS
ATGGCACTTACTAGACTAAAGAACGTCTTTACATCAAAAACTGGACGTTGCCTATATGTCAACTCTGATGATTTTGATGCATCAGACGCATTTGATAATAGAGGTAACTCTCCTAACCGTCCTTTCAAGAGTATTCAGAGGGCGTTAGTTGAAGCAGCAAGATTTTCATATAAGAGTGGTCAGTTTAATGACACATTCGAGTCATTTAGTATAGTATTATATCCTGGCGATTATGTTATTGACAACAGACCAGGCACAAACACAACTGGACAAGCATTTACAGACGACGATATTTTAGAACTAAGTGCATCTAGTGACATGACGTTAGTAGATGAGAGTGGTAATGTCAATCCAAACAACGTATTATATAAATTTAACTCAGTAGAAGGTGGAGTTATAGTTCCTAGAGGTACATCTATCGTAGGTATGGACTTACGTAAGACTAAATTACGTCCTCTATATGTTCCTGATCCTGCATCTGGATCTATTGCTAGTTCTGCAGTATTCAGAGTTACTGGTGGATGTTATTTCTGGCAGTTTTCATTCTTTGATGGTATATCACAGGGTGTGTATAAAGACCCTGCACAACCAAGTGCATCTTCACCTCCAACATATTCTCACCACAAACTCACATGTTTTGAGTATGCTGATGGTAAAAATATTTTGTCGTCAGTTAATGATACAAGTGGTAATGCATTATCAGTTAGTGACTTACAATTATACTATCAAAAAGTAGCAAAAGGATGGTCAGACATTCCCGATAGTACAAGTGTTATATCTGCTGATGAATTACAAGCACGTGTAGAAGAGAACAGGATCGTAGGTCCTAACACAGCAGGTCCTAAAACAATCAATAGTATTGTTACTGACTTTGTTAGCACAAACGTATTCACAACAACAGCAGAGGTAACAACTGCTGATGCTCACGGGTTCTCAGTTGGAACTCCCGTATTGCTTGAAGGTGTCACAGGAACTGATGCATCAAGATTTAATGGATCGTTCTTTATCAGTGCGATACCAACACCAACAACATTTAGATATACTATTAAGAATCCTGTCACAGGTGCACCATCTGGTAACCCAACTGCGGGTGGATCAACGGTGAAGGTGGAGGTTGACAACGTCGACAGTTCATCACCATATATTTTTAACATATCTCTACGTTCTACATGGGGTATGCAAGGTATGCATGCTGATGGTAGTAAAGCAACTGGATTCAAATCCATGGTTGTTGCACAGTTCACTGGTGTATCACTACAGAAAGATGACAACGCATTCATTAAGTGGGATGGATCAGCATATATTGCAGGATCCCACACTGATGGAGATAGTATATTCAAAGCATCATATAGAAACTTCCACGTAAAATGTTCTAATGACTCAGTTATACAGGCGGTATCAGTGTTTGCTGTTGGATTTGCAGATCATTTTGTTGCTGAGTCTGGTGGTGACCAATCTATCACCAACTCTAATAGTAACTTTGGTTCATGTGCATTAAGAGCAAAAGGATTTAAAACAACACCATTTACGCAGGATAAAGCTGGTACTATAACACATATCATACCGCCACAGAAGTTAGCAAGAACATATGCTGCAGTCGGTGGATATACATTTACACTTACATTTAACAATAAATTAGTACAGGCAAGTCCAGCTAACAACAGTCATGGCATTGCAGTCGGTGATTATATAAGATTCGGAACAGCAGATCATCCAGAGTCATATCTAGTATCAGCAGTTGCATCTGGCACAGGAGAACTAACTCTTAATAGAGGTTACAGAAATATCAGTAGTGCAGTCAGCGGTGCTAGTCAGACTGCATATAAAGGAACAGTCAGTGAAATACCTGTTGGTTATGTTGCACTTGACGTACAGAAGATACAAGATAACGCATCACAAGGTAACAGTCAGTGGGCTATCAACCAGTCAGGTATATCAGTTGGTGACTCAGTAATCAATGGTGGCAATTCATACTTAGCAACGTCAGTTGCAGGATCTGGATCCACAGCAGGAGCAGGATCAGGACCTGTGCATACATCTGGTGCAGTCGTAGATAATGAGGTTACATGGGCGTATATTGGTGCAGTCAACACAAGACTATACTTATATGGTTATACTTCAATAGCAACTAAACCTCCATATAAACTTCAAGGTTTTAGTATTGGTGCACGTAAGCAAGATAAGGTATATGTGTCACTAATTGATGGATCCACACAGTCAACATTCGCAGCTTTAGTTACTCCTGATGGTAGTACATCCCCTGCTGATAGTAAATACACTGACATCACAGTCCAAGGATATACACCTGGCGATACAAATCACCCACTACAGTATGATACTTATCAACAGAACTGGTACTTAAGAGTAACAGCAGCAACATCTGGTGATGCAAGTGTCAATGGAACTACAGGCTACGAGGGTATTCATTATCATCTAGGTAATGAAACATTCTATGCTAACTCACTATTCACAGGTTCATCATATACACAACGTATAGCAGATAACAGATCATCTAGAGACAGGACATATCGTGTACGTTACACAGTCGACAACTCAACATCACTATCAAGAGAACCTATCAATGGTTATGTTATTCAGCCCAGAAACGTACCTACTGGTCAGTCATATGCTGATGTATTCTACATCTATGACATACAAGTAGAACAAGAACTTAAGAAGTCAGTACAAGATGGTATCTACTACATGACTGTATTGAAAGGTAGTATATCACCTACAAATGGTAACTTAACTCAGTTCTCATTTGCACAGAACATTAATAACTTATATCCTACACTAGATAAGGACAACCCAACTGAAGATCCTAACGAAGCAACATCTATTGCTAGTAACGTGACTGTTGGTTTAGTTGAAACTACTAACGCTGCTACACCAGGTGTTGAAGATCTGTCACTATCAATTACTAAAGAAGCAATGGGTGACTGGATCATTGAATCTAGAAACCAGTACACCAACGCATCCACATCTGATGCTGCAGTCGACGGATTCATCACACTAGAAGCACGTGATGGTGAAGCATCTGAAGTTGATAAAGCATTAAGGATGGTCGAGGTCAATAGCACAGGTGGTACAGCAACTGAACTTAGACGACCTAGTATTCTAAGATCTGGTAACCATACATTTGAATATGTTGGTTTCGGTCCTGGTAACTATTCTACTGGTCTACCTTCAGTTCAGAACAGAGTTCTTACTGATGCTGAGACACTACTAGCACAGTCACAGAAGGAAGACGGTGGTATCGCATTCTACTCTGGTCTTAACAGTAATGGTGACCTATTCATTGGTAACACTAGAATCTCTGCTGTTACTGGTGAGGAAGCATCACTTGATACTCCATCACTATCAATCGTTGGTGAGACTGCAAACTTACGTCCTGTATTTGATGAGATTATCGTCAGGGATAAGATTACAGTTGAGAACACACAGTTGACCAGTGTATTCAAGGGTAGTATCGAAGTTAATGAAGATGCAGTCATAAGCAAAAACTTAGAAGCTGCTGATATTACAATCAAAGGTGAAGCATCTAACAATGAAGCAACTAAGAAGATTAACGTCACACTCGGTGTACCAAGCACAGCTGCTGCAGCGAACGCAGGAGACTTTGCATTTGAAGGTAATATATCAGCAGGACAGCATCTTGGTTACTACTGGACAGGTGCAGCATGGGCGAAGTTTGGTCTAACTGATACTGGTAACTTACAAGTTACAGGTGGTGCAGCAAGTGGATCCACATGGACTGATGGTGCAGGAGACTTACAACTTAAGAACGGACTAGGTATTGACATACAGTCAACTGGTACATTAAGAGTAACAGGAACAGGTGCAACATCACTTGGTGGTAATTTGACTGTCACAGGCACATCTGAGTTCAATAGTGCAGTAAATATTGATGCTGATTTTGCAGTTAGAACATCTGCAGGAGTCAGTAAATTTACAGTTGATGACGCCACAGGCAACACAGGTATAGTTGGAACACTTACAGTCAATGGAACTACACAACTTGGTAATGATGTAGCATCTGATCTATTGACATTAAATTCTAGAATTAATACTGATGTTGATCCAGAAGCAAGTGGTACAAGAGATATAGGATCCAGTACATTAAAATGGAAAGATGGTCACTTCTCAGGCACAGTTGATGCTACAACATTTACTGGTGCACTGACTGGTAATGTGACTGCAAACAGTGGCACATCAACATTCAATAATATCACAGTCAATGGTCTTGTAACTGGAAATATATCTGGTAACTCAGGAACTGCAACACAACTAGAGACTGCTAGAAATATTGGTGGTGTATCGTTTAATGGTACTGCTAACATAGATCTACCAGGCGTCAATACTGGAGGAAACCAAAATACATCTGGAACTGCAACACAGGCAGACAATATCAATATTGATGAGACAAACAACAATGCTTCTTATCAAGTAACGTTCTCAGCACAGAACAATACAGGATATAATAGACAGTATATTGATAGTGATGATGGTCACTTGGTATGGAATCCTAACACTTGGACTCTTACTGGATTAAATATATCTGCAACAACCATATCTGCAACAACATTTGGTTCATTGACACAAAACTGTCGTGGTACAAGAACAGTATCTACTGGCAACCCTGCAGGGGGAAGCGATGGAGATATCTGGTATAAGTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d236c2cbb5db0115fe0ec5e24a097b3ab221aef136ea5ba7aa0ebe608202dfd2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7956
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage M4-259 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank