Protein

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Genbank accession
XKC23869.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MANQRLELKNPVGVNKALNAADLPMDVWSDVRNVRFKDGKSSKAQGYERVFSSLPADVLYLTPYLNQNTPFWIASTPTKIYRTEGGTPIDISRAAPYNADEDHSWVGGVLNQVVCLTNGVDIPQALLPNATNFQDLPNWPNTHRAKVIRPYKNYLIALNITANSVDQNTTVKWSSPADPGEVPFTWDVNDPTSDAGENFLADTPGAILDGRKLKDSFIIYKEDSVYSMRYIGGTFVFQFQQLFDDIGVLSRNCVAEFDAKHFVVGFGDVYVHNGVQKQSIIEGEMKDYLFSSMNPEAVQRTFVVPDYASSEMWICYSSSANDTKYCDRAIIWNWRNNKWTIRDLPQVFYGTFGIVDPQDPDNWDSDPNAWNTDTTVWGDAKYNPAKMKLVFTSTHNDKCYLIGDTSLFDGSSFDSRLEKTDIYLGDDKNMKVAVSMTPHMQGTGVARISIGSAMIQNGPITWKGPYLYNIGQQHKIDFRVQGRYLAVKYEIDSSGSWTLNGFTVELAPNAGEK
Physico‐chemical
properties
protein length:513 AA
molecular weight: 57593,85040 Da
isoelectric point:5,08177
aromaticity:0,11891
hydropathy:-0,41033

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKC23869.1
1 513
Domain Start End Length (AA) Confidence
N-terminal 1 372 372 0,7411
Central domain 373 502 131 0,1190
C-terminal 503 513 10 0,9972
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-372
Central
373-502
C-terminal
503-513

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage JB8
[NCBI] 		3374763 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas sp.
[NCBI] 		306 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKC23869.1 [NCBI]
Genbank nucleotide accession
PQ473534 [NCBI]
CDS location
range 11994 -> 13535
strand +
CDS
ATGGCTAACCAGCGATTGGAACTTAAAAACCCAGTAGGCGTCAACAAAGCTCTGAACGCTGCCGATCTGCCTATGGATGTGTGGAGTGACGTACGGAACGTTCGATTCAAAGACGGGAAGTCGAGTAAAGCCCAAGGGTATGAACGGGTGTTCTCTTCTCTTCCTGCGGACGTTCTGTACCTTACTCCGTATCTGAACCAGAACACTCCATTCTGGATCGCATCCACCCCTACGAAGATTTATCGCACCGAGGGTGGTACACCTATCGATATCTCCAGGGCGGCCCCATACAATGCGGACGAGGATCACTCTTGGGTGGGTGGGGTTCTCAACCAGGTTGTCTGCTTAACCAACGGCGTTGATATTCCCCAGGCCCTCCTGCCCAACGCAACCAACTTCCAGGACCTTCCGAACTGGCCCAACACACATAGGGCGAAGGTGATTCGTCCATACAAGAACTACCTCATTGCCCTCAACATAACCGCTAACTCTGTGGACCAAAACACTACCGTTAAGTGGTCGTCCCCCGCTGACCCTGGCGAGGTCCCATTCACTTGGGATGTTAACGATCCAACGAGCGATGCAGGAGAAAACTTCCTCGCAGACACTCCCGGAGCTATACTCGATGGGCGCAAGCTCAAAGACTCTTTCATCATCTACAAGGAAGACTCGGTATACTCCATGCGGTATATCGGTGGAACATTTGTGTTTCAGTTCCAGCAGCTCTTCGATGATATTGGTGTCTTGAGCCGTAACTGTGTGGCGGAATTCGACGCTAAGCATTTTGTCGTAGGGTTTGGTGATGTATATGTCCATAATGGTGTCCAGAAGCAATCAATCATTGAAGGGGAAATGAAGGATTATCTGTTCAGCTCTATGAACCCTGAGGCTGTTCAAAGGACCTTCGTTGTTCCGGATTATGCTTCGTCTGAAATGTGGATTTGCTATAGCTCTTCTGCAAACGACACGAAGTACTGTGACAGGGCGATCATCTGGAATTGGCGTAACAACAAGTGGACCATCCGGGATCTACCCCAAGTGTTCTATGGTACTTTCGGGATCGTTGATCCCCAAGACCCGGACAACTGGGATAGTGACCCTAACGCTTGGAACACGGATACTACCGTATGGGGTGACGCCAAGTACAACCCTGCCAAGATGAAGCTGGTGTTTACCAGCACACACAACGACAAGTGCTACCTGATCGGAGACACCTCACTGTTCGATGGGTCCTCTTTTGACTCCCGTCTAGAGAAGACTGACATCTACTTAGGTGATGATAAGAACATGAAGGTCGCCGTCTCGATGACTCCCCACATGCAAGGAACCGGTGTGGCTCGAATCTCGATTGGTAGCGCTATGATTCAGAATGGACCAATCACCTGGAAAGGTCCGTATCTGTATAACATCGGGCAGCAACACAAGATCGACTTCCGTGTCCAGGGTAGATATCTTGCAGTTAAGTATGAGATTGATAGCTCGGGATCGTGGACCTTAAATGGGTTCACCGTTGAGCTCGCCCCGAACGCCGGAGAAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2fa0f6c2ffbfbf868e9e176ab6814fb06ec49c8ecfc9d7baf013f424d4948721
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9046
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Discovery and characterization of a novel Pseudomonas phage of a new genus Nicholls,P., Clark,J.R. and Maresso,A. — — GenBank