Protein

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Genbank accession
AFI55454.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGIENSELLEDIVGIINKRSTTSDTRFKYSLDIIANDSTVSVLKVHTLDITRDFVSRYGDYMILAVSINRLEYDALIYPNREDLTATLTVESVHDKTGIAGGDKAVSRYRVKLTDAVDDGLVYGDTTATSDSEKSQEIKDVTIQLMDLNLEKLRLKDITGIIRDTKVLDLLNVVMSDRGEYSVDVYPPDKINNITQLVVGGQESIAIADFPSWLQKYGGGVYNHNIGFYCYNGWVYVYPLFKVDRDPKRRKLVLCSVGPTQLMGIDNTYSVEPGKLSIISSGKVEMEDTTDKLTYNLGNGVKFNIPNFLRDGVTHDSGVTTVTGSGLRTHGINNEVLNNVKSYKLITNNPFYEISRVNSNRGIRASFTWENANPSLIYPNMEVTVLYKTGDTTHSLKGIVIGMDYQSSIGENEATNPTHTGNAILHLFLDKNVI
Physico‐chemical
properties
protein length:434 AA
molecular weight: 48285,94570 Da
isoelectric point:5,29600
aromaticity:0,08065
hydropathy:-0,25783

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFI55454.1
1 434
Domain Start End Length (AA) Confidence
N-terminal 1 166 166 0,8689
Central domain 167 371 206 0,0846
C-terminal 372 434 62 0,8088
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-166
Central
167-371
C-terminal
372-434

Taxonomy

  Name Taxonomy ID Lineage
Phage Halocynthia phage JM-2012
[NCBI] 		1173297 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halocynthia roretzi
[NCBI] 		7729 Eukaryota > Metazoa > Chordata > Tunicata > Ascidiacea > Stolidobranchia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFI55454.1 [NCBI]
Genbank nucleotide accession
JQ340088 [NCBI]
CDS location
range 163161 -> 164465
strand -
CDS
ATGGGTATTGAAAACTCAGAACTTCTAGAAGATATAGTCGGGATTATAAATAAACGCTCTACAACAAGCGATACGAGGTTTAAATATAGTTTAGACATAATCGCTAATGATTCAACTGTTAGTGTCTTAAAAGTTCATACATTAGATATTACTAGAGACTTCGTTAGTAGATACGGTGACTATATGATTCTGGCGGTTAGTATTAATCGTCTCGAATATGATGCACTTATCTACCCTAACCGAGAAGACTTAACAGCTACCTTAACCGTAGAATCAGTCCACGATAAAACAGGTATAGCTGGTGGAGATAAAGCAGTTAGTCGGTATAGGGTTAAATTAACAGATGCTGTAGATGACGGTTTAGTTTATGGAGATACTACTGCTACTAGCGATTCTGAAAAGTCTCAGGAAATTAAAGACGTTACTATTCAGTTAATGGATTTAAATCTTGAGAAATTAAGACTCAAAGATATAACGGGTATTATTAGAGATACTAAGGTACTAGACTTACTTAATGTTGTGATGTCTGATAGAGGAGAATATTCTGTTGATGTATATCCTCCAGACAAAATTAATAACATTACTCAGTTAGTTGTAGGCGGTCAAGAAAGTATAGCTATAGCAGACTTTCCTAGTTGGTTGCAGAAATACGGTGGTGGTGTTTATAATCACAACATCGGTTTTTACTGCTATAATGGATGGGTATATGTTTATCCTTTATTTAAAGTAGATAGAGACCCCAAACGACGTAAGTTAGTATTATGTAGTGTAGGTCCAACTCAGTTAATGGGAATAGATAATACTTATTCTGTTGAACCCGGTAAGTTATCTATTATCTCATCTGGTAAAGTTGAGATGGAAGATACTACGGATAAATTAACTTATAACTTAGGTAACGGTGTTAAATTTAATATACCTAACTTTCTAAGAGATGGTGTAACTCATGATTCTGGCGTCACCACTGTAACGGGTTCTGGTTTACGTACTCACGGAATCAATAATGAAGTACTTAATAATGTTAAGTCTTATAAGTTAATAACTAATAATCCATTCTATGAGATAAGTCGAGTTAATAGTAATCGTGGTATTCGTGCATCATTCACATGGGAAAATGCTAATCCTTCTCTTATATATCCTAATATGGAAGTTACTGTTCTATATAAGACAGGTGATACTACTCATAGTCTAAAGGGAATCGTTATAGGAATGGATTACCAATCATCTATAGGTGAGAATGAAGCCACAAACCCAACACATACAGGTAATGCTATACTTCATTTATTCTTAGATAAAAACGTTATCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
df52639b8ce81692c8d800de1bb90eef43b98518cfa804361b900c4d9b288f4f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5949
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage from diseased seasquirt, Halocynthia roretzi, showing soft tunic syndrome Mun,J.Y., Jang,H.N., Ha,M.A., Nho,S.W., Cha,I.S., Park,S.B., del Castillo,C.S., Jung,C.Y., Kim,Y.K., Kim,Y.R., Aoki,T.T. and Jung,T.S. 1982-05 — GenBank