Protein

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Genbank accession
AGA17889.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAAVEQMVPNLLGGISQQPDPLKLPGQVKQARNVQLDPTFGALKRPGTELIMQVTGIPKRAKWIPIMRDAREHYYVAIYREGANESGDLRIRVFDLKAGVERAVSFVGGEVEEYFPGDETDWEAIRSLTIGDYTFLSNPNVQPTTWSRSFSRRPEGLVTIGAAGYGTSYIVDFATEDSGQQRRWAVQEMQAPKTKRKKGDGSPDEAGETTVNNWNGTGLSFRVKVEARAFLVDDGEEYGHNYIPYVTLLTPGNNTSPFPDTIRVDVSGEGWDIKVTKQIQSKVYANLGTAQFTTPVDQSGGGASTSDIVTGLSAAINGLGTFTAESIGNVIRVRYSDPTRTDEFTMSARGGTSGTGLESIKYSVDTLAELPTKCWNDYQVAVRNTQDTEVDDYYVKFETDVEDADVPGSGYWVETVKNGDDGGLVDDTMPHVLVRNALGDFTFSSLNNSSYGKTWADRSVGSEDTNPHPTFTESGNGIYGMFMYKNRLGFLTQDAVIMSQVGDYFNFYATSGVTISDADPIDMATSDTKPVKLEAAISSTSGAILFGNQAQFRLSSPDESFGPKTATLDKISNYTYESKADPVQTGVSMIFPTNMGTYSSVYELSTESAKGTPVIEDSSRVIPRLIPSGLTWSTASMNNDTVFFGNAKKGRNVYVFRFFNEGQERKVAGWTTWYYEDQIIEAEAYANLLYMVNWNPRNSVVTLCRSYMMDQDGDPITAGEFTYLPRVDKMIDSTNTDYLTVVGSDFRETTYQVATNWDDFAGGERLITTIYTDNDAGDYDFHVMQPDGLFKVPNGRPFKMGLTYQMELDLPNFFIKNDGRPDRISDVMVQGVYFDMYQSSGISVFVNLQGYEPYAGYLTPIDSDAYNADEAAMRVSGTEYMGMAAPGSQTFVTLTSANPYPSGLTSYSFQGIYNKRGYATIR
Physico‐chemical
properties
protein length:922 AA
molecular weight: 101779,78070 Da
isoelectric point:4,60301
aromaticity:0,11388
hydropathy:-0,41616

Domains

Domains [InterPro]
IPR058003
TTP
1–177
IPR058003 IPR058003
DC_0058
STR
1–921
DC_0058
AGA17889.1
1 922
Architecture
STR
STR 1-921 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGA17889.1
1 922
Domain Start End Length (AA) Confidence
N-terminal 1 186 186 0,9844
Central domain 187 385 200 0,4349
C-terminal 386 922 536 0,1920
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-186
Central
187-385
C-terminal
386-922

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage P60
[NCBI] 		2905923 Uroviricota > Caudoviricetes > Autographivirales > Tiilvirus P60 >
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGA17889.1 [NCBI]
Genbank nucleotide accession
AF338467 [NCBI]
CDS location
range 18938 -> 21706
strand +
CDS
ATGGCAGCAGTTGAACAAATGGTGCCCAATCTACTGGGTGGGATCTCGCAGCAGCCTGATCCCCTCAAGTTACCTGGGCAAGTAAAGCAAGCTAGAAACGTTCAGCTAGACCCAACCTTTGGAGCTCTAAAGCGTCCCGGGACTGAGCTGATTATGCAGGTCACTGGCATCCCCAAGAGGGCCAAGTGGATCCCCATCATGCGTGACGCAAGGGAGCATTACTATGTGGCTATCTATCGTGAAGGTGCTAATGAGTCAGGTGATCTACGCATACGTGTGTTTGACCTGAAGGCAGGGGTTGAGCGGGCGGTCTCGTTCGTCGGTGGAGAAGTAGAAGAGTACTTCCCTGGCGATGAGACTGACTGGGAAGCTATCCGATCCTTGACCATCGGTGACTACACTTTCCTGTCCAATCCAAATGTTCAACCAACTACCTGGAGTAGATCGTTCAGCCGCCGCCCTGAGGGCCTGGTCACCATTGGTGCTGCTGGTTATGGTACCTCCTACATCGTTGACTTTGCTACAGAGGATTCTGGGCAGCAGAGACGATGGGCTGTGCAAGAGATGCAGGCCCCAAAGACTAAGCGTAAGAAAGGCGATGGATCACCTGATGAAGCTGGTGAGACAACCGTCAACAACTGGAATGGAACAGGACTGTCATTCAGGGTTAAGGTTGAAGCACGTGCATTCCTTGTCGATGACGGTGAGGAGTATGGCCACAACTACATCCCTTATGTAACCCTCCTGACTCCTGGTAATAACACCTCCCCATTCCCAGACACCATCCGTGTGGATGTTTCTGGCGAGGGCTGGGACATCAAAGTAACTAAGCAGATCCAGTCCAAGGTGTATGCCAACCTGGGCACCGCTCAGTTCACCACACCTGTCGATCAGTCCGGTGGTGGCGCTAGTACTTCTGACATTGTCACAGGTCTGTCTGCCGCGATTAATGGGTTAGGGACATTCACTGCCGAATCCATCGGTAATGTCATTAGGGTGAGGTATTCTGACCCAACCAGAACTGATGAGTTCACGATGAGTGCCAGAGGTGGTACAAGTGGTACTGGCCTGGAGTCAATCAAGTACTCTGTTGACACATTGGCCGAGCTCCCCACTAAGTGTTGGAATGACTACCAAGTAGCTGTGCGTAACACTCAGGACACTGAGGTTGATGACTACTACGTCAAGTTCGAGACTGATGTTGAGGATGCTGATGTACCTGGTAGTGGTTACTGGGTTGAGACCGTGAAGAACGGAGACGACGGTGGTCTGGTGGATGACACCATGCCCCACGTACTTGTCCGTAACGCTCTAGGAGACTTCACCTTTAGCAGCCTGAACAACAGCAGCTACGGAAAGACCTGGGCTGACAGGTCTGTTGGTTCTGAAGATACTAACCCCCATCCCACCTTTACCGAATCAGGTAATGGTATCTACGGGATGTTCATGTATAAGAACAGGCTTGGGTTCCTGACACAGGATGCTGTGATCATGAGCCAGGTTGGTGATTACTTTAATTTCTACGCCACCTCAGGTGTGACCATTTCGGATGCTGATCCTATTGATATGGCCACCTCAGACACCAAGCCGGTGAAGCTAGAGGCTGCCATCAGCAGTACCTCTGGAGCCATTCTGTTTGGTAATCAAGCCCAGTTCCGACTGTCTTCCCCTGATGAGTCGTTTGGCCCTAAGACGGCCACCTTGGATAAGATCTCCAACTACACCTATGAGTCGAAGGCTGATCCAGTCCAGACTGGTGTGTCGATGATCTTCCCCACCAACATGGGTACCTACAGCAGCGTCTACGAGCTGTCTACAGAGTCCGCTAAGGGCACTCCAGTGATCGAGGATAGCAGTAGGGTCATTCCCCGGCTGATCCCCTCTGGGCTCACCTGGAGCACCGCTAGCATGAACAATGACACGGTGTTCTTCGGTAATGCTAAGAAGGGTAGGAACGTCTACGTCTTCCGGTTCTTCAATGAAGGCCAAGAGCGTAAGGTTGCTGGTTGGACTACCTGGTACTACGAAGATCAGATCATTGAGGCTGAGGCTTATGCCAACCTCCTGTATATGGTCAACTGGAATCCCCGCAACAGCGTGGTAACTCTGTGCCGCTCCTACATGATGGATCAGGATGGAGACCCCATCACTGCTGGAGAGTTCACCTATCTACCCCGTGTGGATAAGATGATCGACTCCACAAACACTGACTACCTGACTGTCGTAGGTTCTGACTTCCGGGAGACCACCTATCAGGTGGCTACTAACTGGGATGACTTCGCAGGCGGTGAGCGTCTAATCACGACCATATACACAGATAATGATGCAGGTGATTATGACTTCCACGTCATGCAACCTGATGGCCTATTCAAGGTTCCTAATGGAAGACCATTCAAGATGGGGTTGACCTATCAGATGGAGCTGGATCTACCCAACTTCTTCATTAAGAATGACGGGCGTCCAGATAGGATCTCTGATGTGATGGTTCAAGGTGTCTACTTTGACATGTACCAATCATCAGGCATCTCCGTCTTTGTGAATCTGCAGGGCTACGAACCTTATGCTGGATACCTCACACCTATCGACTCTGATGCATACAATGCAGATGAGGCTGCTATGAGGGTGTCTGGTACTGAGTACATGGGAATGGCTGCTCCTGGTAGCCAGACATTCGTAACTCTCACCTCTGCCAATCCATACCCCTCTGGACTCACCTCTTACAGCTTCCAAGGGATCTACAACAAACGAGGTTATGCCACAATCCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0c259cc2c904af385123850fd3c58d2d5a2d01f635fcc588d0804ccbe1391834
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7906
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages Chen,F. and Lu,J. 2002 11976141 GenBank
Genomics of marine cyanopodoviruses Chen,F. and Huang,S. 2018-08-15 — GenBank