Protein

View in Explore
Genbank accession
YP_009823275.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAFQPTLRLTKGEELTFQEMDDNFQGLADALNNPNTEIQLTAMPSYLSTNITGALVEANDLLPLGGVIVFPAGELVLGASVTIPQNVAWRGQGQFSTSVRRSAPTVKVTMSTATIIKEMQLFASDSGVWVEIPTATLYQKLLSASIRTTGSRCVNIAADGGQELEITGCNIGTGSQLIAGIGLTGVDTAAQPRHFSNNSGSGSPLYDFSGMNDTFVSGGYTLGFFSDATSIKAMITNLRVGGNPNLVDHPIYGENMVIDNCVFSGFVTLYCTDSRIDAICGDYNFIDLGSGNSVEIRGRNYVPSWTTSATDPVLGNGTIKGRYSRSGGVVTVSGEIRIGSTTNTGSGIWRVSLPITALSLTWDQPCAGIFEAVGAGKPFQYQGSMIIPTANRDVVEFRYVDSRTNFVQSNTGAEVTAAANKIVLVGYTYQKVVGMAQVYQNGLLLSLADGDYDETFAGGLGIDFTINTVIAPSDVFTVIIPKPAAASVVGGTSSTGDTWPQDTRLRFNFSYFAK
Physico‐chemical
properties
protein length:514 AA
molecular weight: 54532,72220 Da
isoelectric point:4,70101
aromaticity:0,08949
hydropathy:0,05700

Domains

Domains [InterPro]
DC_2261
ATT
2–38
DC_2261 IPR012334 DC_2174
IPR012334
STR
48–360
IPR012334
YP_009823275.1
1 514
Architecture
ATT
STR
RBD
ATT 2-38 | STR 48-360 | RBD 361-514
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009823275.1
1 514
Domain Start End Length (AA) Confidence
N-terminal 1 68 68 0,8465
Central domain 69 297 230 0,9736
C-terminal 298 514 216 0,9873
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-68
Central
69-297
C-terminal
298-514

Taxonomy

  Name Taxonomy ID Lineage
Phage Rheinheimera phage Barba21A
[NCBI] 		2849598 Uroviricota > Caudoviricetes > Barbavirus >
Host Rheinheimera sp. BAL341
[NCBI] 		1708203 Pseudomonadota > Gammaproteobacteria > Chromatiales > Chromatiaceae > Rheinheimera >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009823275.1 [NCBI]
Genbank nucleotide accession
NC_048191.1 [NCBI]
CDS location
range 65439 -> 66983
strand +
CDS
ATGGCTTTCCAACCAACTTTAAGATTAACAAAAGGTGAAGAACTCACCTTTCAAGAAATGGATGATAACTTTCAGGGATTAGCTGATGCGTTAAATAATCCCAATACGGAAATACAGTTAACCGCAATGCCTTCATACCTTAGTACAAATATTACAGGCGCTTTGGTTGAGGCTAATGATTTATTACCTCTTGGGGGTGTTATAGTCTTTCCCGCTGGGGAGCTTGTATTAGGTGCTTCGGTAACAATACCACAAAATGTGGCTTGGCGAGGTCAGGGACAGTTTTCAACATCAGTAAGGCGTTCAGCACCTACTGTCAAGGTTACAATGTCTACAGCCACCATCATCAAAGAGATGCAATTGTTCGCTTCTGATTCTGGTGTGTGGGTTGAGATTCCAACAGCCACTTTGTATCAAAAGTTACTGTCTGCATCTATCAGGACTACTGGTAGTCGGTGCGTTAATATTGCGGCTGATGGTGGGCAAGAGTTAGAGATTACAGGGTGTAATATAGGTACTGGCTCGCAATTAATAGCAGGTATTGGGTTAACTGGTGTGGATACAGCGGCACAACCAAGGCACTTTAGTAACAATTCTGGTTCAGGTTCACCATTGTATGACTTTAGTGGTATGAATGATACTTTTGTTTCTGGCGGTTACACGTTAGGGTTCTTTAGTGATGCTACGTCTATTAAAGCTATGATTACTAACCTACGAGTAGGTGGTAATCCCAATTTAGTTGACCATCCGATATACGGCGAAAACATGGTTATTGATAATTGTGTATTTAGTGGTTTTGTTACGCTTTATTGCACCGATAGTCGCATTGATGCCATTTGTGGGGATTACAATTTTATTGATTTAGGCTCAGGTAACAGTGTAGAAATTCGCGGCAGAAACTATGTTCCATCATGGACTACATCTGCAACAGATCCAGTGTTAGGCAACGGCACCATTAAAGGGCGCTACTCCCGCTCAGGTGGCGTTGTCACTGTTAGCGGTGAAATCAGAATTGGCTCAACCACCAACACAGGATCTGGAATTTGGCGCGTAAGCTTGCCAATTACCGCGTTAAGCTTAACGTGGGATCAGCCCTGTGCAGGTATATTTGAAGCAGTAGGGGCTGGAAAGCCGTTTCAATATCAAGGATCCATGATTATACCGACAGCAAACCGTGACGTTGTAGAATTTAGATACGTTGACAGCCGAACAAACTTTGTTCAGTCAAATACTGGCGCAGAAGTTACGGCGGCAGCAAATAAGATTGTACTGGTTGGGTATACATATCAAAAAGTTGTTGGCATGGCGCAGGTTTACCAGAATGGGCTTTTATTGTCATTGGCTGATGGTGATTATGATGAAACCTTTGCTGGCGGATTAGGCATTGATTTTACAATTAACACAGTTATAGCCCCATCTGATGTGTTTACCGTTATAATACCAAAACCCGCAGCAGCAAGTGTGGTGGGCGGTACGTCAAGCACTGGTGACACTTGGCCTCAAGATACCCGCTTACGCTTTAATTTCAGCTACTTTGCAAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
92e68448bf137ffc47e91e23451109f7bec6f2e1c5746ec5320c2c24f6d10450
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7730
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and seasonal variations among aquatic phages infecting the Baltic Sea Gammaproteobacteria Rheinheimera sp. bal341 Nilsson,E., Li,K., Fridlund,J., Sulcius,S., Bunse,C., Karlsson,C.M.G., Lindh,M., Lundin,D., Pinhassi,J. and Holmfeldt,K. 2019-09-15 — GenBank