Protein

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Genbank accession
WPK38545.1 [GenBank]
Protein name
HNH endonuclease
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MNATYETIDFSVAMTNQLFTYDSKTGVIRLKSTGCKIGNLNTADGGTRIECNGKTLSGARVAWIIETGNTIPPGFAVVCRQRTPGHYGNRISNLYLVDVARDPNFYA
Physico‐chemical
properties
protein length:107 AA
molecular weight: 11681,10130 Da
isoelectric point:8,90568
aromaticity:0,09346
hydropathy:-0,20841

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK38545.1
1 107
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,1114
Central domain 83 96 15 0,0070
C-terminal 97 107 10 0,9975
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-96
C-terminal
97-107

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV129
[NCBI] 		3077274 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK38545.1 [NCBI]
Genbank nucleotide accession
OR352959 [NCBI]
CDS location
range 18537 -> 18860
strand -
CDS
ATGAACGCTACATACGAAACCATCGATTTTTCGGTCGCAATGACTAACCAGCTATTCACCTACGACAGCAAAACCGGAGTCATCCGTCTGAAGTCCACCGGCTGCAAGATTGGCAACCTCAATACCGCCGACGGCGGAACACGTATCGAATGCAACGGAAAGACGCTGTCTGGCGCACGCGTGGCGTGGATTATTGAGACGGGCAATACAATCCCTCCCGGCTTCGCCGTTGTGTGCCGCCAGCGCACTCCAGGGCACTACGGCAACCGCATAAGCAACCTTTACCTGGTAGACGTCGCGCGCGACCCGAATTTTTATGCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
88519aa1670bd352f57db6b6a95b4bd5221a8259e6172b3354626c464a5220e7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7262
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank