Protein

View in Explore
Genbank accession
QXN67883.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MSMRDMNGNRIMDSFSFDKEYEGIVLDNNDFDDKLFIKVYISELFINDIPEKVIDINENIDHTKIINNNKINFKKSVVHNNYLKCYPIIYNNMNLDIMKPKIGSKVIVKFINGNPKLPYYENKGYYTDIIIPIPPEIIDPPTDPSTSDDYTSFGYYRMIKLTNPAMIGRDILKIQKKLKTLGYTFTIDTLDGIYDLRMLNYIKDFQSKNKLSVDGQIGPITFRTIMRKNI
Physico‐chemical
properties
protein length:230 AA
molecular weight: 26857,81720 Da
isoelectric point:8,35615
aromaticity:0,11304
hydropathy:-0,38043

Domains

Domains [InterPro]
DC_1457
ATT
3–131
DC_1457 IPR036365
IPR036366
ATT
160–227
IPR036366
IPR036365
RBD
165–225
IPR036365
IPR002477
CBM
170–223
IPR002477
QXN67883.1
1 230
Architecture
ATT
ATT
ATT 3-131 | ATT 157-227 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Listeria phage LPJP1
[NCBI] 		2852115 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Listeria grayi
[NCBI] 		1641 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXN67883.1 [NCBI]
Genbank nucleotide accession
MZ422438.1 [NCBI]
CDS location
range 107805 -> 108497
strand +
CDS
ATGTCAATGAGAGATATGAATGGAAATCGTATTATGGACTCATTTAGCTTCGATAAAGAGTATGAAGGAATAGTATTAGATAATAACGATTTTGACGATAAACTATTTATTAAAGTATATATCTCTGAATTGTTTATTAATGATATTCCTGAGAAGGTTATCGATATTAATGAAAATATTGATCATACTAAAATAATTAATAATAATAAAATAAATTTTAAAAAATCTGTAGTACATAATAATTATTTGAAGTGCTATCCAATCATATATAATAATATGAATCTTGATATAATGAAACCAAAAATAGGTTCAAAAGTTATTGTCAAATTTATTAATGGTAATCCAAAATTGCCATATTATGAGAATAAAGGATATTATACAGATATTATTATACCAATTCCTCCCGAAATTATAGATCCTCCTACTGATCCATCCACTAGTGATGATTATACTTCTTTTGGATACTATAGAATGATTAAACTTACTAATCCGGCTATGATTGGTCGAGATATACTAAAAATCCAAAAGAAATTAAAGACTCTTGGGTATACATTCACTATTGATACACTAGACGGTATATATGATTTAAGAATGTTGAATTATATAAAAGATTTTCAATCTAAAAATAAACTAAGTGTAGATGGACAGATTGGTCCAATTACGTTTAGAACAATTATGCGTAAAAATATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6bb3f83e42ca639f53aba281415f5a9cf47a1fc2a0905a332e62a6db3c5d09d2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6198
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and engineering of a Listeria grayi bacteriophage Erickson,S., Paulson,J., Brown,M., Hahn,W., Gil,J., Barron-Montenegro,R., Moreno-Switt,A., Eisenberg,M. and Nguyen,M.M. 2021 — GenBank